AgeFactDB-the JenAge Ageing Factor Database-towards data integration in ageing research

被引:43
作者
Huehne, Rolf [1 ]
Thalheim, Torsten [1 ]
Suehnel, Juergen [1 ]
机构
[1] Jena Ctr Syst Biol Ageing JenAge, Fritz Lipmann Inst, Leibniz Inst Age Res, Biocomp Grp, Jena, Germany
关键词
GENCOLORS; RESOURCES; BIOLOGY; GENES;
D O I
10.1093/nar/gkt1073
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
AgeFactDB (http://agefactdb.jenage.de) is a database aimed at the collection and integration of ageing phenotype data including lifespan information. Ageing factors are considered to be genes, chemical compounds or other factors such as dietary restriction, whose action results in a changed lifespan or another ageing phenotype. Any information related to the effects of ageing factors is called an observation and is presented on observation pages. To provide concise access to the complete information for a particular ageing factor, corresponding observations are also summarized on ageing factor pages. In a first step, ageing-related data were primarily taken from existing databases such as the Ageing Gene Database-GenAge, the Lifespan Observations Database and the Dietary Restriction Gene Database-GenDR. In addition, we have started to include new ageing-related information. Based on homology data taken from the HomoloGene Database, AgeFactDB also provides observation and ageing factor pages of genes that are homologous to known ageing-related genes. These homologues are considered as candidate or putative ageing-related genes. AgeFactDB offers a variety of search and browse options, and also allows the download of ageing factor or observation lists in TSV, CSV and XML formats.
引用
收藏
页码:D892 / D896
页数:5
相关论文
共 17 条
[1]  
Acland A, 2013, NUCLEIC ACIDS RES, V41, pD8, DOI [10.1093/nar/gkx1095, 10.1093/nar/gks1189, 10.1093/nar/gkq1172]
[2]   Getting to the Root of Aging [J].
Baudisch, Annette ;
Vaupel, James W. .
SCIENCE, 2012, 338 (6107) :618-619
[3]   GenColors-based comparative genome databases for small eukaryotic genomes [J].
Felder, Marius ;
Romualdi, Alessandro ;
Petzold, Andreas ;
Platzer, Matthias ;
Suehnel, Juergen ;
Gloeckner, Gernot .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D692-D699
[4]   DiProGB: the dinucleotide properties genome browser [J].
Friedel, Maik ;
Nikolajewa, Swetlana ;
Suehnel, Juergen ;
Wilhelm, Thomas .
BIOINFORMATICS, 2009, 25 (19) :2603-2604
[5]   DiProDB: a database for dinucleotide properties [J].
Friedel, Maik ;
Nikolajewa, Swetlana ;
Suehnel, Juergen ;
Wilhelm, Thomas .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D37-D40
[6]  
Huehne Rolf, 2007, Briefings in Functional Genomics & Proteomics, V6, P220, DOI 10.1093/bfgp/elm020
[7]   GENETIC-ANALYSIS OF LIFE-SPAN IN CAENORHABDITIS-ELEGANS [J].
JOHNSON, TE ;
WOOD, WB .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (21) :6603-6607
[8]   Understanding the odd science of aging [J].
Kirkwood, TBL .
CELL, 2005, 120 (04) :437-447
[9]   Systems biology of ageing and longevity [J].
Kirkwood, Thomas B. L. .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2011, 366 (1561) :64-70
[10]  
Kurtz J., 2013, ASP. NET MVC 4 Web API