Locating all transition states and studying the reaction pathways of potential energy surfaces

被引:52
作者
Westerberg, KM [1 ]
Floudas, CA [1 ]
机构
[1] Princeton Univ, Dept Chem Engn, Princeton, NJ 08544 USA
关键词
D O I
10.1063/1.478850
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We propose a new method for calculating all stationary states, including saddle points of all orders, of a potential energy surface based on the alpha BB deterministic branch and bound global optimization algorithm. This method is based on rigorous optimization methods and offers a theoretical guarantee of enclosing all solutions to the equation del V=0. We apply this method to Murrel-Sorbie analytic potential energy surfaces of HCN, HSiN, HBO, and CS2, and to the Empirical Conformational Energy Program for Peptides (ECEPP/3) potential energy surfaces of alanine, alanine dipeptide, and tetra-alanine. For alanine, alanine dipeptide, and tetra-alanine, we proceed to analyze the topography of the potential energy surface by calculating reaction pathways, transition rate matrices, time-evolution of occupation probabilities, and rate disconnectivity graphs. (C) 1999 American Institute of Physics. [S0021-9606(99)50818-0].
引用
收藏
页码:9259 / 9295
页数:37
相关论文
共 35 条
[1]   A global optimization method, αBB, for general twice-differentiable constrained NLPs -: I.: Theoretical advances [J].
Adjiman, CS ;
Dallwig, S ;
Floudas, CA ;
Neumaier, A .
COMPUTERS & CHEMICAL ENGINEERING, 1998, 22 (09) :1137-1158
[2]   Rigorous convex underestimators for general twice-differentiable problems [J].
Adjiman, CS ;
Floudas, CA .
JOURNAL OF GLOBAL OPTIMIZATION, 1996, 9 (01) :23-40
[3]   A global optimization method, αBB, for general twice-differentiable constrained NLPs -: II.: Implementation and computational results [J].
Adjiman, CS ;
Androulakis, IP ;
Floudas, CA .
COMPUTERS & CHEMICAL ENGINEERING, 1998, 22 (09) :1159-1179
[4]   QUASI-CLASSICAL TRAJECTORY STUDY OF THE DYNAMICS OF THE REACTION O(3P) + CS2(X1-SIGMA-G+) -] CS(X1-SIGMA+) + SO(X3-SIGMA-) USING 2 MODEL POTENTIAL-ENERGY SURFACES [J].
AGUILAR, A ;
GONZALEZ, M ;
ILLAS, F ;
RUBIO, J ;
SAYOS, R .
CHEMICAL PHYSICS, 1992, 161 (1-2) :99-126
[5]   HBO OSCULATING COMPLEX IN THE B(2P) + OH(2-PI) REACTION [J].
ALBERTI, M ;
SOLE, A ;
AGUILAR, A .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS, 1991, 87 (01) :37-44
[6]   B(2P) + H2O (X1A1) - A QUASI-CLASSICAL 3D TRAJECTORY CALCULATION [J].
ALBERTI, M ;
SAYOS, R ;
SOLE, A ;
AGUILAR, A .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS, 1991, 87 (08) :1057-1068
[7]  
ANDOULAKIS IP, 1995, J GLOBAL OPTIM, V7, P337
[8]   SEARCH FOR STATIONARY-POINTS ON SURFACE [J].
BANERJEE, A ;
ADAMS, N ;
SIMONS, J ;
SHEPARD, R .
JOURNAL OF PHYSICAL CHEMISTRY, 1985, 89 (01) :52-57
[9]   The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics [J].
Becker, OM ;
Karplus, M .
JOURNAL OF CHEMICAL PHYSICS, 1997, 106 (04) :1495-1517
[10]   POTENTIAL SURFACES AND DYNAMICS - WHAT CLUSTERS TELL US [J].
BERRY, RS .
CHEMICAL REVIEWS, 1993, 93 (07) :2379-2394