Intrinsically disordered linkers determine the interplay between phase separation and gelation in multivalent proteins

被引:462
作者
Harmon, Tyler S. [1 ]
Holehouse, Alex S. [1 ]
Rosen, Michael K. [2 ]
Pappu, Rohit, V [1 ]
机构
[1] Washington Univ, Ctr Biol Syst Engn, Dept Biomed Engn, St Louis, MO 63130 USA
[2] UT Southwestern Med Ctr, Dept Biophys, Howard Hughes Med Inst, Dallas, TX USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
SEQUENCE-ENSEMBLE RELATIONSHIPS; MOLECULAR-SIZE DISTRIBUTION; MONTE-CARLO SIMULATIONS; THERMOREVERSIBLE GELATION; 3-DIMENSIONAL POLYMERS; RNA; TRANSITION; GRANULES; DOMAINS; REGIONS;
D O I
10.7554/eLife.30294
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Phase transitions of linear multivalent proteins control the reversible formation of many intracellular membraneless bodies. Specific non-covalent crosslinks involving domains/motifs lead to system-spanning networks referred to as gels. Gelation transitions can occur with or without phase separation. In gelation driven by phase separation multivalent proteins and their ligands condense into dense droplets, and gels form within droplets. System spanning networks can also form without a condensation or demixing of proteins into droplets. Gelation driven by phase separation requires lower protein concentrations, and seems to be the biologically preferred mechanism for forming membraneless bodies. Here, we use coarse-grained computer simulations and the theory of associative polymers to uncover the physical properties of intrinsically disordered linkers that determine the extent to which gelation of linear multivalent proteins is driven by phase separation. Our findings are relevant for understanding how sequence-encoded information in disordered linkers influences phase transitions of multivalent proteins.
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页数:31
相关论文
共 79 条
[1]  
Almdal K., 1993, POLYM GELS NETW, V1, P5
[2]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[3]   Compositional Control of Phase-Separated Cellular Bodies [J].
Banani, Salman F. ;
Rice, Allyson M. ;
Peeples, William B. ;
Lin, Yuan ;
Jain, Saumya ;
Parker, Roy ;
Rosen, Michael K. .
CELL, 2016, 166 (03) :651-663
[4]   Phase Transitions of Multivalent Proteins Can Promote Clustering of Membrane Receptors [J].
Banjade, Sudeep ;
Rosen, Michael K. .
ELIFE, 2014, 3
[5]   Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck [J].
Banjade, Sudeep ;
Wu, Qiong ;
Mittal, Anuradha ;
Peeples, William B. ;
Pappu, Rohit V. ;
Rosen, Michael K. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (47) :E6426-E6435
[6]  
Bateman A., 2000, NUCLEIC ACIDS RES, V28, P263, DOI [DOI 10.1093/nar/gkt1223, DOI 10.1093/nar/28.1.263]
[7]   Mechanisms and Consequences of Macromolecular Phase Separation [J].
Bergeron-Sandoval, Louis-Philippe ;
Safaee, Nozhat ;
Michnick, Stephen W. .
CELL, 2016, 165 (05) :1067-1079
[8]   Phase diagram of patchy colloids: Towards empty liquids [J].
Bianchi, Emanuela ;
Largo, Julio ;
Tartaglia, Piero ;
Zaccarelli, Emanuela ;
Sciortino, Francesco .
PHYSICAL REVIEW LETTERS, 2006, 97 (16)
[9]   Theoretical and numerical study of the phase diagram of patchy colloids: Ordered and disordered patch arrangements [J].
Bianchi, Emanuela ;
Tarlaglia, Piero ;
Zaccarelli, Emanuela ;
Sciortino, Francesco .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (14)
[10]   Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics [J].
Boeynaems, Steven ;
Bogaert, Elke ;
Kovacs, Denes ;
Konijnenberg, Albert ;
Timmerman, Evy ;
Volkov, Alex ;
Guharoy, Mainak ;
De Decker, Mathias ;
Jaspers, Tom ;
Ryan, Veronica H. ;
Janke, Abigail M. ;
Baatsen, Pieter ;
Vercruysse, Thomas ;
Kolaitis, Regina-Maria ;
Daelemans, Dirk ;
Taylor, J. Paul ;
Kedersha, Nancy ;
Anderson, Paul ;
Impens, Francis ;
Sobott, Frank ;
Schymkowitz, Joost ;
Rousseau, Frederic ;
Fawzi, Nicolas L. ;
Robberecht, Wim ;
Van Damme, Philip ;
Tompa, Peter ;
Van Den Bosch, Ludo .
MOLECULAR CELL, 2017, 65 (06) :1044-+