Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage

被引:24
作者
Simonich, Cassandra A. [1 ,2 ]
Doepker, Laura [1 ]
Ralph, Duncan [3 ]
Williams, James A. [4 ]
Dhar, Amrit [3 ,5 ]
Yaffe, Zak [2 ]
Gentles, Lauren [6 ,7 ]
Small, Christopher T. [3 ]
Oliver, Brian [8 ]
Vigdorovich, Vladimir [8 ]
Prasad, Vidya Mangala [4 ]
Nduati, Ruth [9 ]
Sather, D. Noah [8 ]
Lee, Kelly K. [4 ]
Matsen, Frederick A. [3 ]
Overbaugh, Julie [1 ,2 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Div Human Biol, Seattle, WA 98109 USA
[2] Univ Washington, Sch Med, Med Scientist Training Program, Seattle, WA 98195 USA
[3] Fred Hutchinson Canc Res Ctr, Publ Hlth Sci Div, Seattle, WA 98109 USA
[4] Univ Washington, Dept Med Chem, Seattle, WA 98195 USA
[5] Univ Washington, Dept Stat, Seattle, WA 98195 USA
[6] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA
[7] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA
[8] Ctr Infect Dis Res, Seattle, WA 98109 USA
[9] Univ Nairobi, Dept Pediat & Child Hlth, Nairobi, Kenya
关键词
IMMUNODEFICIENCY-VIRUS TYPE-1; AFFINITY MATURATION; GLYCAN RECOGNITION; CRYSTAL-STRUCTURE; POTENT; VACCINE; VULNERABILITY; TRANSMISSION; COEVOLUTION; INFECTION;
D O I
10.1038/s41467-019-09481-7
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
HIV-infected infants develop broadly neutralizing plasma responses with more rapid kinetics than adults, suggesting the ontogeny of infant responses could better inform a path to achievable vaccine targets. Here we reconstruct the developmental lineage of BF520.1, an infant-derived HIV-specific broadly neutralizing antibody (bnAb), using computational methods developed specifically for this purpose. We find that the BF520.1 inferred naive precursor binds HIV Env. We also show that heterologous cross-clade neutralizing activity evolved in the infant within six months of infection and that, ultimately, only 2% SHM is needed to achieve the full breadth of the mature antibody. Mutagenesis and structural analyses reveal that, for this infant bnAb, substitutions in the kappa chain were critical for activity, particularly in CDRL1. Overall, the developmental pathway of this infant antibody includes features distinct from adult antibodies, including several that may be amenable to better vaccine responses.
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页数:12
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