Polymer field-theory simulations on graphics processing units

被引:42
作者
Delaney, Kris T. [1 ]
Fredrickson, Glenn H. [2 ,3 ]
机构
[1] Univ Calif Santa Barbara, Mat Res Lab, Santa Barbara, CA 93106 USA
[2] Univ Calif Santa Barbara, Dept Mat Engn, Santa Barbara, CA 93106 USA
[3] Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA
基金
美国国家科学基金会;
关键词
Field-theoretic simulations; SCFT; Polymer theory; CUDA; GPU;
D O I
10.1016/j.cpc.2013.04.002
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We report the first CUDA (TM) graphics-processing-unit (CPU) implementation of the polymer field-theoretic simulation framework for determining fully fluctuating expectation values of equilibrium properties for periodic and select aperiodic polymer systems. Our implementation is suitable both for self-consistent field theory (mean-field) solutions of the field equations, and for fully fluctuating simulations using the complex Langevin approach. Running on NVIDIA (R) Tesla T20 series GPUs, we find double-precision speedups of up to 30x compared to single-core serial calculations on a recent reference CPU, while single-precision calculations proceed up to 60x faster than those on the single CPU core. Due to intensive communications overhead, an MPI implementation running on 64 CPU cores remains two times slower than a single CPU. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:2102 / 2110
页数:9
相关论文
共 50 条
  • [1] Computer simulations of the Ising Model on Graphics Processing Units
    Block, B. J.
    Preis, T.
    EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, 2012, 210 (01) : 133 - 145
  • [2] Accelerating Physical Simulations Using Graphics Processing Units
    Hoffmann, Karl Heinz
    Hofmann, Michael
    Lang, Jens
    Rnger, Gudula
    Seeger, Steffen
    IT-INFORMATION TECHNOLOGY, 2011, 53 (02): : 49 - 59
  • [3] Efficient magnetohydrodynamic simulations on graphics processing units with CUDA
    Wong, Hon-Cheng
    Wong, Un-Hong
    Feng, Xueshang
    Tang, Zesheng
    COMPUTER PHYSICS COMMUNICATIONS, 2011, 182 (10) : 2132 - 2160
  • [4] Molecular Dynamics Simulations Using Graphics Processing Units
    Baker, John A.
    Hirst, Jonathan D.
    MOLECULAR INFORMATICS, 2011, 30 (6-7) : 498 - 504
  • [5] Massively parallel simulations of relativistic fluid dynamics on graphics processing units with CUDA
    Bazow, Dennis
    Heinz, Ulrich
    Strickland, Michael
    COMPUTER PHYSICS COMMUNICATIONS, 2018, 225 : 92 - 113
  • [6] General purpose molecular dynamics simulations fully implemented on graphics processing units
    Anderson, Joshua A.
    Lorenz, Chris D.
    Travesset, A.
    JOURNAL OF COMPUTATIONAL PHYSICS, 2008, 227 (10) : 5342 - 5359
  • [7] Accelerating Petri-Net simulations using NVIDIA Graphics Processing Units
    Yianni, Panayioti C.
    Neves, Luis C.
    Rama, Dovile
    Andrews, John D.
    EUROPEAN JOURNAL OF OPERATIONAL RESEARCH, 2018, 265 (01) : 361 - 371
  • [8] Large-scale ferrofluid simulations on graphics processing units
    Polyakov, A. Yu.
    Lyutyy, T. V.
    Denisov, S.
    Reva, V. V.
    Haenggi, P.
    COMPUTER PHYSICS COMMUNICATIONS, 2013, 184 (06) : 1483 - 1489
  • [9] Line-by-line spectroscopic simulations on graphics processing units
    Collange, Sylvain
    Daumas, Marc
    Defour, David
    COMPUTER PHYSICS COMMUNICATIONS, 2008, 178 (02) : 135 - 143
  • [10] Green computing on graphics processing units
    Magoules, Frederic
    Ahamed, Abal-Kassim Cheik
    Suzuki, Atsushi
    CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 2016, 28 (16) : 4305 - 4325