Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation

被引:235
作者
Hoffmann, Thomas J. [1 ,2 ]
Ehret, Georg B. [3 ,4 ]
Nandakumar, Priyanka [3 ]
Ranatunga, Dilrini [5 ]
Schaefer, Catherine [5 ]
Kwok, Pui-Yan [2 ]
Iribarren, Carlos [5 ]
Chakravarti, Aravinda [3 ]
Risch, Neil [1 ,2 ,5 ]
机构
[1] Univ Calif San Francisco, Dept Epidemiol & Biostat, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Inst Human Genet, San Francisco, CA 94143 USA
[3] McKusick Nathans Inst Genet Med, Ctr Complex Dis Gen, Baltimore, MD USA
[4] Univ Geneva, Dept Specialties Internal Med, Cardiol, Geneva, Switzerland
[5] Kaiser Permanente Northern Calif Div Res, Oakland, CA USA
关键词
PULSE PRESSURE; MEAN ARTERIAL; GENETIC-LOCI; METAANALYSIS; VARIANTS; TRAITS; COMMON; INDIVIDUALS; AFRICAN; HYPERTENSION;
D O I
10.1038/ng.3715
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Longitudinal electronic health records on 99,785 Genetic Epidemiology Research on Adult Health and Aging (GERA) cohort individuals provided 1,342,814 systolic and diastolic blood pressure measurements for a genome-wide association study on long-term average systolic, diastolic, and pulse pressure. We identified 39 new loci among 75 genome-wide significant loci (P <= 5 x 10(-8)), with most replicating in the combined International Consortium for Blood Pressure (ICBP; n = 69,396) and UK Biobank (UKB; n = 152,081) studies. Combining GERA with ICBP yielded 36 additional new loci, with most replicating in UKB. Combining all three studies (n = 321,262) yielded 241 additional genome-wide significant loci, although no replication sample was available for these. All associated loci explained 2.9%, 2.5%, and 3.1 % of variation in systolic, diastolic, and pulse pressure, respectively, in GERA non-Hispanic whites. Using multiple blood pressure measurements in GERA doubled the variance explained. A normalized risk score was associated with time to onset of hypertension (hazards ratio = 1.18, P = 8.2 x 10(-45)). Expression quantitative trait locus analysis of blood pressure loci showed enrichment in aorta and tibial artery.
引用
收藏
页码:54 / 64
页数:11
相关论文
共 44 条
[1]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[2]   Estimating her tability of complex traits from genonne-wide association studies using IBS-based Haseman-Elston regression [J].
Chen, Guo-Bo .
FRONTIERS IN GENETICS, 2014, 5
[3]   Model-free Estimation of Recent Genetic Relatedness [J].
Conomos, Matthew P. ;
Reiner, Alexander P. ;
Weir, Bruce S. ;
Thornton, Timothy A. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2016, 98 (01) :127-148
[4]   Genomic control for association studies [J].
Devlin, B ;
Roeder, K .
BIOMETRICS, 1999, 55 (04) :997-1004
[5]   The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals [J].
Ehret, Georg B. ;
Ferreira, Teresa ;
Chasman, Daniel I. ;
Jackson, Anne U. ;
Schmidt, Ellen M. ;
Johnson, Toby ;
Thorleifsson, Gudmar ;
Luan, Jian'an ;
Donnelly, Louise A. ;
Kanoni, Stavroula ;
Petersen, Ann -Kristin ;
Pihurl, Vasyl ;
Strawbridge, Rona J. ;
Shungin, Dmitry ;
Hughes, Maria F. ;
Meirelles, Osorio ;
Kaakinen, Marika ;
Bouatia-Naji, Nabila ;
Kristiansson, Kati ;
Shah, Sonia ;
Kleber, Marcus E. ;
Guo, Xiuqing ;
Lyytikainen, Leo-Pekka ;
Fava, Cristiano ;
Eriksson, Nidas ;
Nolte, Ilja M. ;
Magnusson, Patrik K. ;
Salfati, Elias L. ;
Rallidis, Loukianos S. ;
Theusch, Elizabeth ;
Smith, Andrew J. P. ;
Folkersen, Lasse ;
Witkowska, Kate ;
Pers, Tune H. ;
Joehanes, Roby ;
Kim, Stuart K. ;
Lataniotis, Lazaros ;
Jansen, Rick ;
Johnson, Andrew D. ;
Warren, Helen ;
Kim, Young Jin ;
Zhao, Wei ;
Wu, Ying ;
Tayo, Bamidele O. ;
Bochud, Murielle ;
Absher, Devin ;
Adair, Linda S. ;
Amin, Najaf ;
Arkingl, Dan E. ;
Axelsson, Tomas .
NATURE GENETICS, 2016, 48 (10) :1171-1184
[6]   Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk [J].
Ehret, Georg B. ;
Munroe, Patricia B. ;
Rice, Kenneth M. ;
Bochud, Murielle ;
Johnson, Andrew D. ;
Chasman, Daniel I. ;
Smith, Albert V. ;
Tobin, Martin D. ;
Verwoert, Germaine C. ;
Hwang, Shih-Jen ;
Pihur, Vasyl ;
Vollenweider, Peter ;
O'Reilly, Paul F. ;
Amin, Najaf ;
Bragg-Gresham, Jennifer L. ;
Teumer, Alexander ;
Glazer, Nicole L. ;
Launer, Lenore ;
Zhao, Jing Hua ;
Aulchenko, Yurii ;
Heath, Simon ;
Sober, Siim ;
Parsa, Afshin ;
Luan, Jian'an ;
Arora, Pankaj ;
Dehghan, Abbas ;
Zhang, Feng ;
Lucas, Gavin ;
Hicks, Andrew A. ;
Jackson, Anne U. ;
Peden, John F. ;
Tanaka, Toshiko ;
Wild, Sarah H. ;
Rudan, Igor ;
Igl, Wilmar ;
Milaneschi, Yuri ;
Parker, Alex N. ;
Fava, Cristiano ;
Chambers, John C. ;
Fox, Ervin R. ;
Kumari, Meena ;
Go, Min Jin ;
van der Harst, Pim ;
Kao, Wen Hong Linda ;
Sjogren, Marketa ;
Vinay, D. G. ;
Alexander, Myriam ;
Tabara, Yasuharu ;
Shaw-Hawkins, Sue ;
Whincup, Peter H. .
NATURE, 2011, 478 (7367) :103-109
[7]   Association of genetic variation with systolic and diastolic blood pressure among African Americans: the Candidate Gene Association Resource study [J].
Fox, Ervin R. ;
Young, J. Hunter ;
Li, Yali ;
Dreisbach, Albert W. ;
Keating, Brendan J. ;
Musani, Solomon K. ;
Liu, Kiang ;
Morrison, Alanna C. ;
Ganesh, Santhi ;
Kutlar, Abdullah ;
Ramachandran, Vasan S. ;
Polak, Josef F. ;
Fabsitz, Richard R. ;
Dries, Daniel L. ;
Farlow, Deborah N. ;
Redline, Susan ;
Adeyemo, Adebowale ;
Hirschorn, Joel N. ;
Sun, Yan V. ;
Wyatt, Sharon B. ;
Penman, Alan D. ;
Palmas, Walter ;
Rotter, Jerome I. ;
Townsend, Raymond R. ;
Doumatey, Ayo P. ;
Tayo, Bamidele O. ;
Mosley, Thomas H., Jr. ;
Lyon, Helen N. ;
Kang, Sun J. ;
Rotimi, Charles N. ;
Cooper, Richard S. ;
Franceschini, Nora ;
Curb, J. David ;
Martin, Lisa W. ;
Eaton, Charles B. ;
Kardia, Sharon L. R. ;
Taylor, Herman A. ;
Caulfield, Mark J. ;
Ehret, Georg B. ;
Johnson, Toby ;
Chakravarti, Aravinda ;
Zhu, Xiaofeng ;
Levy, Daniel .
HUMAN MOLECULAR GENETICS, 2011, 20 (11) :2273-2284
[8]   Genome-wide Association Analysis of Blood-Pressure Traits in African-Ancestry Individuals Reveals Common Associated Genes in African and Non-African Populations [J].
Franceschini, Nora ;
Fox, Ervin ;
Zhang, Zhaogong ;
Edwards, Todd L. ;
Nalls, Michael A. ;
Sung, Yun Ju ;
Tayo, Bamidele O. ;
Sun, Yan V. ;
Gottesman, Omri ;
Adeyemo, Adebawole ;
Johnson, Andrew D. ;
Young, J. Hunter ;
Rice, Ken ;
Duan, Qing ;
Chen, Fang ;
Li, Yun ;
Tang, Hua ;
Fornage, Myriam ;
Keene, Keith L. ;
Andrews, Jeanette S. ;
Smith, Jennifer A. ;
Fau, Jessica D. ;
Guangfa, Zhang ;
Guo, Wei ;
Liu, Yu ;
Murray, Sarah S. ;
Musani, Solomon K. ;
Srinivasan, Sathanur ;
Edwards, Digna R. Velez ;
Wang, Heming ;
Becker, Lewis C. ;
Bovet, Pascal ;
Bochud, Murielle ;
Broecke, Ulrich ;
Burnier, Michel ;
Carty, Cara ;
Chasman, Daniel I. ;
Ehret, Georg ;
Chen, Wei-Min ;
Chen, Guanjie ;
Chen, Wei ;
Ding, Jingzhong ;
Dreisbach, Albert W. ;
Evans, Michele K. ;
Guo, Xiuqing ;
Garcia, Melissa E. ;
Jensen, Rich ;
Keller, Margaux E. ;
Lettre, Guillaume ;
Lotay, Vaneet .
AMERICAN JOURNAL OF HUMAN GENETICS, 2013, 93 (03) :545-554
[9]   The genetic architecture of type 2 diabetes [J].
Fuchsberger, Christian ;
Flannick, Jason ;
Teslovich, Tanya M. ;
Mahajan, Anubha ;
Agarwala, Vineeta ;
Gaulton, Kyle J. ;
Ma, Clement ;
Fontanillas, Pierre ;
Moutsianas, Loukas ;
McCarthy, Davis J. ;
Rivas, Manuel A. ;
Perry, John R. B. ;
Sim, Xueling ;
Blackwell, Thomas W. ;
Robertson, Neil R. ;
Rayner, N. William ;
Cingolani, Pablo ;
Locke, Adam E. ;
Tajes, Juan Fernandez ;
Highland, Heather M. ;
Dupuis, Josee ;
Chines, Peter S. ;
Lindgren, Cecilia M. ;
Hartl, Christopher ;
Jackson, Anne U. ;
Chen, Han ;
Huyghe, Jeroen R. ;
van de Bunt, Martijn ;
Pearson, Richard D. ;
Kumar, Ashish ;
Mueller-Nurasyid, Martina ;
Grarup, Niels ;
Stringham, Heather M. ;
Gamazon, Eric R. ;
Lee, Jaehoon ;
Chen, Yuhui ;
Scott, Robert A. ;
Below, Jennifer E. ;
Chen, Peng ;
Huang, Jinyan ;
Go, Min Jin ;
Stitzel, Michael L. ;
Pasko, Dorota ;
Parker, Stephen C. J. ;
Varga, Tibor V. ;
Green, Todd ;
Beer, Nicola L. ;
Day-Williams, Aaron G. ;
Ferreira, Teresa ;
Fingerlin, Tasha .
NATURE, 2016, 536 (7614) :41-+
[10]   Effects of Long-Term Averaging of Quantitative Blood Pressure Traits on the Detection of Genetic Associations [J].
Ganesh, Santhi K. ;
Chasman, Daniel I. ;
Larson, Martin G. ;
Guo, Xiuqing ;
Verwoert, Germain ;
Bis, Joshua C. ;
Gu, Xiangjun ;
Smith, Albert V. ;
Yang, Min-Lee ;
Zhang, Yan ;
Ehret, Georg ;
Rose, Lynda M. ;
Hwang, Shih-Jen ;
Papanicolau, George J. ;
Sijbrands, Eric J. ;
Rice, Kenneth ;
Eiriksdottir, Gudny ;
Pihur, Vasyl ;
Ridker, Paul M. ;
Vasan, Ramachandran S. ;
Newton-Cheh, Christopher ;
Raffel, Leslie J. ;
Amin, Najaf ;
Rotter, Jerome I. ;
Liu, Kiang ;
Launer, Lenore J. ;
Xu, Ming ;
Caulfield, Mark ;
Morrison, Alanna C. ;
Johnson, Andrew D. ;
Vaidya, Dhananjay ;
Dehghan, Abbas ;
Li, Guo ;
Bouchard, Claude ;
Harris, Tamara B. ;
Zhang, He ;
Boerwinkle, Eric ;
Siscovick, David S. ;
Gao, Wei ;
Uitterlinden, Andre G. ;
Rivadeneira, Fernando ;
Hofman, Albert ;
Willer, Cristen J. ;
Franco, Oscar H. ;
Huo, Yong ;
Witteman, Jacqueline C. M. ;
Munroe, Patricia B. ;
Gudnason, Vilmundur ;
Palmas, Walter ;
van Duijn, Cornelia .
AMERICAN JOURNAL OF HUMAN GENETICS, 2014, 95 (01) :49-65