''Candidatus Colwellia aromaticivorans" sp. nov., "Candidatus Halocyntiibacter alkanivorans" sp. nov., and "Candidatus Ulvibacter alkanivorans" sp. nov. Genome Sequences

被引：9

作者：

Campeao, Mariana E. ^{[1
,2
]}

Swings, Jean ^{[1
,2
,3
]}

Silva, Bruno Sergio ^{[1
,2
]}

Otsuki, Koko ^{[1
,2
]}

Thompson, Fabiano L. ^{[1
,2
]}

Thompson, Cristiane C. ^{[1
]}

机构：

[1] Univ Fed Rio de Janeiro, Inst Biol, Microbiol Lab, Rio de Janeiro, Brazil

[2] Univ Fed Rio de Janeiro, Ctr Technol CT2, SAGE COPPE, Rio de Janeiro, Brazil

[3] Univ Ghent, Ghent, Belgium

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 15期

关键词：

READ ALIGNMENT; QUALITY; ALGORITHM; SILVA;

D O I：

10.1128/MRA.00086-19

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Unplanned oil spills during offshore production are a serious problem for the industry and the marine environment. Here, we present the genome sequence analysis of three novel hydrocarbon-degrading bacteria, namely, "Candidatus Colwellia aromaticivorans" sp. nov., "Candidatus Halocyntiibacter alkanivorans" sp. nov., and "Candidatus Ulvibacter alkanivorans" sp. nov.

引用

收藏

页数：3

相关论文

共 23 条

[11] MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities [J].

Kang, Dongwan D. ;

Froula, Jeff ;

Egan, Rob ;

Wang, Zhong .

PEERJ, 2015, 3

[12] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[13] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[14]

Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]

[15] Fast and accurate short read alignment with Burrows-Wheeler transform [J].

Li, Heng ;

Durbin, Richard .

BIOINFORMATICS, 2009, 25 (14) :1754-1760

[16] Infernal 1.0: inference of RNA alignments [J].

Nawrocki, Eric P. ;

Kolbe, Diana L. ;

Eddy, Sean R. .

BIOINFORMATICS, 2009, 25 (10) :1335-1337

[17] Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life [J].

Parks, Donovan H. ;

Rinke, Christian ;

Chuvochina, Maria ;

Chaumeil, Pierre-Alain ;

Woodcroft, Ben J. ;

Evans, Paul N. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

NATURE MICROBIOLOGY, 2017, 2 (11) :1533-1542

[18] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

[19] SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB [J].

Pruesse, Elmar ;

Quast, Christian ;

Knittel, Katrin ;

Fuchs, Bernhard M. ;

Ludwig, Wolfgang ;

Peplies, Joerg ;

Gloeckner, Frank Oliver .

NUCLEIC ACIDS RESEARCH, 2007, 35 (21) :7188-7196

[20] The SILVA ribosomal RNA gene database project: improved data processing and web-based tools [J].

Quast, Christian ;

Pruesse, Elmar ;

Yilmaz, Pelin ;

Gerken, Jan ;

Schweer, Timmy ;

Yarza, Pablo ;

Peplies, Joerg ;

Gloeckner, Frank Oliver .

NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D590-D596