Automated segmentation of multiple red blood cells with digital holographic microscopy

被引:55
作者
Yi, Faliu [1 ]
Moon, Inkyu [1 ]
Javidi, Bahram [2 ]
Boss, Daniel [3 ]
Marquet, Pierre [3 ,4 ]
机构
[1] Chosun Univ, Sch Comp Engn, Kwangju 501759, South Korea
[2] Univ Connecticut, Dept Elect & Comp Engn, Storrs, CT 06269 USA
[3] Ecole Polytech Fed Lausanne, LNDC, BMI, Lausanne, Switzerland
[4] Ctr Neurosci Psychiat, Dept Psychiat DPCHUV, Prillylausanne, Switzerland
基金
新加坡国家研究基金会;
关键词
three-dimensional image processing; red blood cells analysis; red blood cells phase image segmentation; digital holographic microscopy; medical and biological imaging; watershed segmentation; NUMERICAL RECONSTRUCTION; TRACKING; DISTANCE; CONTRAST;
D O I
10.1117/1.JBO.18.2.026006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We present a method to automatically segment red blood cells (RBCs) visualized by digital holographic microscopy (DHM), which is based on the marker-controlled watershed algorithm. Quantitative phase images of RBCs can be obtained by using off-axis DHM along to provide some important information about each RBC, including size, shape, volume, hemoglobin content, etc. The most important process of segmentation based on marker-controlled watershed is to perform an accurate localization of internal and external markers. Here, we first obtain the binary image via Otsu algorithm. Then, we apply morphological operations to the binary image to get the internal markers. We then apply the distance transform algorithm combined with the watershed algorithm to generate external markers based on internal markers. Finally, combining the internal and external markers, we modify the original gradient image and apply the watershed algorithm. By appropriately identifying the internal and external markers, the problems of oversegmentation and undersegmentation are avoided. Furthermore, the internal and external parts of the RBCs phase image can also be segmented by using the marker-controlled watershed combined with our method, which can identify the internal and external markers appropriately. Our experimental results show that the proposed method achieves good performance in terms of segmenting RBCs and could thus be helpful when combined with an automated classification of RBCs. (C) 2013 Society of Photo-Optical Instrumentation Engineers (SPIE) [DOI: 10.1117/1JBO.18.2.026006]
引用
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页数:8
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