Molecular characterization and distribution of the needle nematode Longidorus laevicapitatus Williams, 1959 (Nematoda: Longidoridae) in Costa Rica

被引:8
作者
Peraza-Padilla, Walter [1 ]
Archidona-Yuste, Antonio [2 ]
Cantalapiedra-Navarrete, Carolina [2 ]
Zamora-Araya, Tatiana [1 ]
Palomares-Rius, Juan E. [2 ]
Castillo, Pablo [2 ]
机构
[1] Univ Nacl, Escuela Ciencias Agr, Nematol Lab, Heredia 863000, Costa Rica
[2] CSIC, IAS, ceiA3, Campus Excelencia Int Agroalimentario, Cordoba 14004, Spain
关键词
Bayesian inference; D2-D3; ITS1; 18S; Longidorids; Phylogeny; rDNA; Taxonomy; N. SP NEMATODA; XIPHINEMA; PHYLOGENY; REGION;
D O I
10.1007/s10658-016-0997-4
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Correct identification of Longidorus species in Costa Rica is essential to establish appropriate control strategies for preventing the spread of these nematodes. Nematode surveys conducted in the rainy seasons from 2013 to 2015 in areas arbitrarily chosen and widely distributed in the whole territory of Costa Rica, resulted in an overall prevalence of Longidorus spp. infesting soils both cultivated, ornamental and wild plants of 40.26 %. Integrative morphometric and molecular data for Longidorus populations were obtained using D2-D3 expansion segments of 28S rRNA, ITS1-rRNA, and the partial 18S-rRNA, identifying a solely species identified as Longidorus laevicapitatus. Morphology and morphometrical traits analysis of these populations of L. laevicapitatus were in agreement with those of the original and posterior descriptions of the species, except for some minor differences, which may be a result of intraspecific variability. The phylogenetic relationships of this species with other representatives of Longidorus spp. using D2-D3 expansion segments and the partial 18S indicated that L. laevicapitatus clustered clearly separately in a basal position in both phylogenetic trees.
引用
收藏
页码:443 / 450
页数:8
相关论文
共 42 条
[1]   Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae) in Olive and a Description of Six New Species [J].
Archidona-Yuste, Antonio ;
Navas-Cortes, Juan A. ;
Cantalapiedra-Navarrete, Carolina ;
Palomares-Rius, Juan E. ;
Castillo, Pablo .
PLOS ONE, 2016, 11 (01)
[2]  
Azpilicueta C, 2013, NEMATROPICA, V43, P271
[3]   A new root-knot nematode, Meloidogyne baetica n. sp (Nematoda: Heteroderidae), parasitizing wild olive in Southern Spain [J].
Castillo, P ;
Vovlas, N ;
Subbotin, S ;
Troccoli, A .
PHYTOPATHOLOGY, 2003, 93 (09) :1093-1102
[4]   Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis [J].
Castresana, J .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) :540-552
[5]  
Cherry T, 1997, J NEMATOL, V29, P23
[6]  
Cooler W.A., 1979, P317
[7]  
Coomans August, 1996, Russian Journal of Nematology, V4, P51
[8]  
Crozzoli R., 2000, Nematologia Mediterranea, V28, P213
[9]  
DALMASSO A, 1967, ANN EPIPHYT, V18, P313
[10]  
De Ley P, 1999, NEMATOLOGY, V1, P591, DOI 10.1163/156854199508559