The EcoCyc database

被引:288
作者
Karp, PD
Riley, M
Saier, M
Paulsen, IT
Collado-Vides, J
Paley, SM
Pellegrini-Toole, A
Bonavides, C
Gama-Castro, S
机构
[1] SRI Int, Bioinformat Res Grp, Menlo Pk, CA 94025 USA
[2] Marine Biol Lab, Woods Hole, MA 02543 USA
[3] Univ Calif San Diego, Dept Biol, La Jolla, CA 92093 USA
[4] Inst Genome Res, Rockville, MD 20850 USA
[5] Univ Nacl Autonoma Mexico, Ctr Invest Sobre Fijac Nitrogeno, Programa Biol Mol Computac, Cuernavaca 62100, Morelos, Mexico
关键词
D O I
10.1093/nar/30.1.56
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of transcriptional control of gene expression. EcoCyc is queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc is available at http://ecocyc.org/.
引用
收藏
页码:56 / 58
页数:3
相关论文
共 6 条
  • [1] Integrated access to metabolic and genomic data
    Karp, PD
    Paley, S
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 1996, 3 (01) : 191 - 212
  • [2] A collaborative environment for authoring large knowledge bases
    Karp, PD
    Chaudhri, VK
    Paley, SM
    [J]. JOURNAL OF INTELLIGENT INFORMATION SYSTEMS, 1999, 13 (03) : 155 - 194
  • [3] Pathway databases: A case study in computational symbolic theories
    Karp, PD
    [J]. SCIENCE, 2001, 293 (5537) : 2040 - 2044
  • [4] Integrated pathway-genome databases and their role in drug discovery
    Karp, PP
    Krummenacker, M
    Paley, S
    Wagg, J
    [J]. TRENDS IN BIOTECHNOLOGY, 1999, 17 (07) : 275 - 281
  • [5] The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
    Perez-Rueda, Ernesto
    Collado-Vides, Julio
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (08) : 1838 - 1847
  • [6] RegulonDB (version 3.2):: transcriptional regulation and operon organization in Escherichia coli K-12
    Salgado, H
    Santos-Zavaleta, A
    Gama-Castro, S
    Millén-Zárate, D
    Díaz-Peredo, E
    Sánchez-Solano, F
    Pérez-Rueda, E
    Bonavides-Martínez, C
    Collado-Vides, J
    [J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (01) : 72 - 74