Theoretical illumination of water-inserted structures of the CaMn4O5 cluster in the S2 and S3 states of oxygen-evolving complex of photosystem II: full geometry optimizations by B3LYP hybrid density functional

被引:168
作者
Isobe, H. [1 ,2 ]
Shoji, M. [3 ]
Yamanaka, S. [4 ]
Umena, Y. [5 ]
Kawakami, K. [5 ]
Kamiya, N. [5 ]
Shen, J. -R. [2 ]
Yamaguchi, K. [1 ,6 ]
机构
[1] Handairigaku Technores NPO, Toyonaka, Osaka 5600043, Japan
[2] Okayama Univ, Fac Sci, Grad Sch Nat Sci & Technol, Okayama 7008530, Japan
[3] Univ Tsukuba, Ctr Computat Sci, Tsukuba, Ibaraki 3058577, Japan
[4] Osaka Univ, Grad Sch Sci, Toyonaka, Osaka 5600043, Japan
[5] Osaka City Univ, OUC Adv Res Inst Nat Sci & Technol OCARNA, Osaka 5588585, Japan
[6] Osaka Univ, NanoSci Design Ctr, Toyonaka, Osaka 5600043, Japan
关键词
MANGANESE COMPLEX; OXIDIZING COMPLEX; CRYSTAL-STRUCTURE; MN CLUSTER; PROTONATION PATTERN; ANGSTROM RESOLUTION; SYNTHETIC MODEL; CHEMICAL-BONDS; PH-DEPENDENCE; BASIS-SETS;
D O I
10.1039/c2dt31420g
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Full geometry optimizations of several inorganic model clusters, CaMn(4)O(4)XYZ(H2O)(2) (X, Y, Z = H2O, OH- or O2-), by the use of the B3LYP hybrid density functional theory (DFT) have been performed to illuminate plausible molecular structures of the catalytic site for water oxidation in the S-0, S-1, S-2 and S-3 states of the Kok cycle for the oxygen-evolving complex (OEC) of photosystem II (PSII). Optimized geometries obtained by the energy gradient method have revealed the degree of symmetry breaking of the unstable three-center Mn-a-X-Mn-d bond in CaMn(4)O(4)XYZ(H2O)(2). The right-elongated (R) Mn-a-X center dot center dot center dot Mn-d and left-elongated (L) Mn-a center dot center dot center dot X-Mn-d structures appear to occupy local minima on a double-well potential for several key intermediates in these states. The effects of insertion of one extra water molecule to the vacant coordination site, Mn-d (Mn-a), for R (L) structures have also been examined in detail. The greater stability of the L-type structure over the R-type has been concluded for key intermediates in the S-2 and S-3 states. Implications of the present DFT structures are discussed in relation to previous DFT and related results, together with recent X-ray diffraction results for model compounds of cubane-like OEC cluster of PSII.
引用
收藏
页码:13727 / 13740
页数:14
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