Molecular systematics and phylogenetic analysis of the Asian endemic freshwater sleepers (Gobiiformes: Odontobutidae)

被引:26
作者
Li, Hongjie [1 ,2 ,3 ]
He, You [4 ]
Jiang, Jiamei [1 ,2 ,3 ]
Liu, Zhizhi [1 ,2 ,3 ]
Li, Chenhong [1 ,2 ,3 ]
机构
[1] Shanghai Univ Key Lab Marine Anim Taxon & Evolut, Shanghai, Peoples R China
[2] Shanghai Ocean Univ, Key Lab Explorat & Utilizat Aquat Genet Resources, Minist Educ, Shanghai, Peoples R China
[3] Shanghai Ocean Univ, Natl Demonstrat Ctr Expt Fisheries Sci Educ, Shanghai, Peoples R China
[4] Chinese Acad Sci, Shanghai Inst Appl Phys, Shanghai Synchrotron Radiat Facil, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
Odontobutidae; Systematics; New genus; Phylogeny; Divergence time; Biogeography; COMPLETE MITOCHONDRIAL GENOME; PERCIFORMES; FISHES; GOBIOIDEI; INTERRUPTA; TELEOSTEI; TOOL;
D O I
10.1016/j.ympev.2017.12.026
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Odontobutidae is a group of freshwater sleepers endemic to East and Southeast Asia. The composition of the Odontobutidae is controversial and the systematics position of some species (e.g. Philypnus chalmersi) remains unknown. Phylogenetic relationship among the odontobutids has never been really tested due to the lack of informative morphological characters, and that molecular data have not been collected in many species. Here, we sampled 41 specimens, representing all known genera of the Odontobutidae except the Laotian genus Terateleotris, in addition to a disputable odontobutid species, Philypnus chalmersi and 14 outgroups (six families). We collected sequence data of 4434 single-copy nuclear coding loci using gene capture and Illumina sequencing. A robust phylogeny of the odontobutids and outgroups was built, confirming that the Odontobutidae is monophyletic and sister to the Rhyacichthyidae. We verified that Neodontobutis, Sineleotris and Philypnus chalmersi are members of the Odontobutidae based on the resulting phylogeny as well as patterns of pectoral girdle examined by X-ray microtomography. We proposed a new genus Microdous for Philypnus chalmersi based on the new morphological and molecular evidences. The family of the Odontobutidae can be divided into two clades: Microdous (=Philypnus) sister to a group consisting of Micropercops and Sineleotris, and Odontobutis sister to a group unifying Perccottus and Neodontobutis. Divergence time among the odontobutids was estimated based on 100 most clock-like loci and three fossil calibration points using BEAST. Ancestral range of the family was reconstructed using Reconstruct Ancestral States in Phylogenies (RASP) and BioGeoBEARS. The results suggest that the common ancestor of the odontobutids originated around 30.8 Ma (20.7-42.0 Ma, 95% HPDs) in South China. Orogeny, climatic change and river capture might account for diversification and current distribution of the odontobutids.
引用
收藏
页码:1 / 11
页数:11
相关论文
共 72 条
[1]   Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies [J].
Agorreta, Ainhoa ;
San Mauro, Diego ;
Schliewen, Ulrich ;
Van Tassell, James L. ;
Kovacic, Marcelo ;
Zardoya, Rafael ;
Rueber, Lukas .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (03) :619-633
[2]  
Ahnelt Harald, 2004, Proceedings of the California Academy of Sciences, V55, P358
[3]   Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome b genes [J].
Akihito ;
Iwata, A ;
Kobayashi, T ;
Ikeo, K ;
Imanishi, T ;
Ono, H ;
Umehara, Y ;
Hamamatsu, C ;
Sugiyama, K ;
Ikeda, Y ;
Sakamoto, K ;
Fumihito, A ;
Ohno, S ;
Gojobori, T .
GENE, 2000, 259 (1-2) :5-15
[4]  
[Anonymous], 1981, DIVISION FRESHWATER
[5]  
[Anonymous], GEOL REV
[6]   Carlomonnius quasigobius gen. et sp nov.: the first gobioid fish from the Eocene of Monte Bolca, Italy [J].
Bannikov, Alexandre F. ;
Carnevale, Giorgio .
BULLETIN OF GEOSCIENCES, 2016, 91 (01) :13-22
[7]  
BIRDSONG RS, 1988, B MAR SCI, V42, P174
[8]   BEAST 2: A Software Platform for Bayesian Evolutionary Analysis [J].
Bouckaert, Remco ;
Heled, Joseph ;
Kuehnert, Denise ;
Vaughan, Tim ;
Wu, Chieh-Hsi ;
Xie, Dong ;
Suchard, Marc A. ;
Rambaut, Andrew ;
Drummond, Alexei J. .
PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (04)
[9]   The First Record of a Trans-Oceanic Sister-Group Relationship between Obligate Vertebrate Troglobites [J].
Chakrabarty, Prosanta ;
Davis, Matthew P. ;
Sparks, John S. .
PLOS ONE, 2012, 7 (08)
[10]  
Chen I-Shiung, 2002, Journal of the Fisheries Society of Taiwan, V29, P229