Crystal structures of wild-type Trichoderma reesei Cel7A catalytic domain in open and closed states

被引:11
作者
Bodenheimer, Annette M. [1 ,2 ]
Meilleur, Flora [1 ,2 ]
机构
[1] North Carolina State Univ, Mol & Struct Biochem Dept, Raleigh, NC USA
[2] Oak Ridge Natl Lab, Neutron Sci Directorate, Oak Ridge, TN USA
基金
美国食品与农业研究所; 美国国家科学基金会;
关键词
Cel7A; cellulase; closed state; processivity; product-binding site; Trichoderma reesei; FAMILY; 7; CELLOBIOHYDROLASE; MOLECULAR-DYNAMICS; GLYCOSIDE HYDROLASES; LIMITED PROTEOLYSIS; PRODUCT INHIBITION; C-TERMINUS; PROTEIN; BINDING; PROCESSIVITY; FLEXIBILITY;
D O I
10.1002/1873-3468.12464
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Trichoderma reesei Cel7A efficiently hydrolyses cellulose. We report here the crystallographic structures of the wild-type TrCel7A catalytic domain (CD) in an open state and, for the first time, in a closed state. Molecular dynamics (MD) simulations indicate that the loops along the CD tunnel move in concerted motions. Together, the crystallographic and MD data suggest that the CD cycles between the tense and relaxed forms that are characteristic of work producing enzymes. Analysis of the interactions formed by R251 provides a structural rationale for the concurrent decrease in product inhibition and catalytic efficiency measured for product-binding site mutants.
引用
收藏
页码:4429 / 4438
页数:10
相关论文
共 52 条
[1]   Alleviating Product Inhibition in Cellulase Enzyme Cel7A [J].
Atreya, Meera E. ;
Strobel, Kathryn L. ;
Clark, Douglas S. .
BIOTECHNOLOGY AND BIOENGINEERING, 2016, 113 (02) :330-338
[2]   Towards a molecular-level theory of carbohydrate processivity in glycoside hydrolases [J].
Beckham, Gregg T. ;
Stahlberg, Jerry ;
Knott, Brandon C. ;
Himmel, Michael E. ;
Crowley, Michael F. ;
Sandgren, Mats ;
Sorlie, Morten ;
Payne, Christina M. .
CURRENT OPINION IN BIOTECHNOLOGY, 2014, 27 :96-106
[3]   Cellulose Degradation by Polysaccharide Monooxygenases [J].
Beeson, William T. ;
Vu, Van V. ;
Span, Elise A. ;
Phillips, Christopher M. ;
Marletta, Michael A. .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 84, 2015, 84 :923-946
[4]   Crystallization and preliminary X-ray diffraction analysis of Hypocrea jecorina Cel7A in two new crystal forms [J].
Bodenheimer, Annette M. ;
Cuneo, Matthew J. ;
Swartz, Paul D. ;
He, Junhong ;
O'Neill, Hugh M. ;
Myles, Dean A. A. ;
Evans, Barbara R. ;
Meilleur, Flora .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 :773-776
[5]   Carbohydrate-binding modules: fine-tuning polysaccharide recognition [J].
Boraston, AB ;
Bolam, DN ;
Gilbert, HJ ;
Davies, GJ .
BIOCHEMICAL JOURNAL, 2004, 382 (03) :769-781
[6]   Sequencing, biochemical characterization, crystal structure and molecular dynamics of cellobiohydrolase Cel7A from Geotrichum candidum 3C [J].
Borisova, Anna S. ;
Eneyskaya, Elena V. ;
Bobrov, Kirill S. ;
Jana, Suvamay ;
Logachev, Anton ;
Polev, Dmitrii E. ;
Lapidus, Alla L. ;
Ibatullin, Farid M. ;
Saleem, Umair ;
Sandgren, Mats ;
Payne, Christina M. ;
Kulminskaya, Anna A. ;
Stahlberg, Jerry .
FEBS JOURNAL, 2015, 282 (23) :4515-4537
[7]   Computational Investigation of the pH Dependence of Loop Flexibility and Catalytic Function in Glycoside Hydrolases [J].
Bu, Lintao ;
Crowley, Michael F. ;
Himmel, Michael E. ;
Beckham, Gregg T. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2013, 288 (17) :12175-12186
[8]   Transient Kinetics and Rate-Limiting Steps for the Processive Cellobiohydrolase Cel7A: Effects of Substrate Structure and Carbohydrate Binding Domain [J].
Cruys-Bagger, Nicolaj ;
Tatsumi, Hirosuke ;
Ren, Guilin Robin ;
Borch, Kim ;
Westh, Peter .
BIOCHEMISTRY, 2013, 52 (49) :8938-8948
[9]   Recalcitrant polysaccharide degradation by novel oxidative biocatalysts [J].
Dimarogona, Maria ;
Topakas, Evangelos ;
Christakopoulos, Paul .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2013, 97 (19) :8455-8465
[10]   C-1-C-X REVISITED - INTRAMOLECULAR SYNERGISM IN A CELLULASE [J].
DIN, N ;
DAMUDE, HG ;
GILKES, NR ;
MILLER, RC ;
WARREN, RAJ ;
KILBURN, DG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (24) :11383-11387