Molecular basis of RNA guanine-7 methyltransferase (RNMT) activation by RAM

被引:52
作者
Varshney, Dhaval [1 ,2 ]
Petit, Alain-Pierre [3 ]
Bueren-Calabuig, Juan A. [4 ,5 ]
Jansen, Chimed [3 ]
Fletcher, Dan A. [3 ]
Peggie, Mark [6 ]
Weidlich, Simone [6 ]
Scullion, Paul [3 ]
Pisliakov, Andrei V. [4 ,5 ]
Cowling, Victoria H. [1 ,2 ]
机构
[1] Univ Dundee, Sch Life Sci, Ctr Gene Regulat & Express, Dow St, Dundee DD1 5EH, Scotland
[2] Univ Dundee, Sch Life Sci, MRC Prot Phosphorylat & Ubiquitylat Unit, Dow St, Dundee DD1 5EH, Scotland
[3] Univ Dundee, Sch Life Sci, Div Biol Chem & Drug Discovery, Drug Discovery Unit, Dow St, Dundee DD1 5EH, Scotland
[4] Univ Dundee, Sch Life Sci, Computat Biol, Dow St, Dundee DD1 5EH, Scotland
[5] Univ Dundee, Sch Sci & Engn, Phys, Dundee DD1 5EH, Scotland
[6] Univ Dundee, Sch Life Sci, Div Signal Transduct Therapies, Dow St, Dundee DD1 5EH, Scotland
基金
英国惠康基金; 英国医学研究理事会; 英国工程与自然科学研究理事会;
关键词
CAPPING ENZYME READS; CAP METHYLTRANSFERASE; POLYMERASE-II; STRUCTURAL INSIGHTS; D12; SUBUNIT; MECHANISM; EVOLUTION; DOMAIN; PHOSPHORYLATION; METHYLATION;
D O I
10.1093/nar/gkw637
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Maturation and translation of mRNA in eukaryotes requires the addition of the 7-methylguanosine cap. In vertebrates, the cap methyltransferase, RNA guanine-7 methyltransferase (RNMT), has an activating subunit, RNMT-Activating Miniprotein (RAM). Here we report the first crystal structure of the human RNMT in complex with the activation domain of RAM. A relatively unstructured and negatively charged RAM binds to a positively charged surface groove on RNMT, distal to the active site. This results in stabilisation of a RNMT lobe structure which co-evolved with RAM and is required for RAM binding. Structure-guided mutagenesis and molecular dynamics simulations reveal that RAM stabilises the structure and positioning of the RNMT lobe and the adjacent alpha-helix hinge, resulting in optimal positioning of helix A which contacts substrates in the active site. Using biophysical and biochemical approaches, we observe that RAM increases the recruitment of the methyl donor, AdoMet (S-adenosyl methionine), to RNMT. Thus we report the mechanism by which RAM allosterically activates RNMT, allowing it to function as a molecular rheostat for mRNA cap methylation.
引用
收藏
页码:10423 / 10436
页数:14
相关论文
共 35 条
[1]   Human cap methyltransferase (RNMT) N-terminal non-catalytic domain mediates recruitment to transcription initiation sites [J].
Aregger, Michael ;
Cowling, Victoria H. .
BIOCHEMICAL JOURNAL, 2013, 455 :67-73
[2]   Progression through the RNA Polymerase II CTD Cycle [J].
Buratowski, Stephen .
MOLECULAR CELL, 2009, 36 (04) :541-546
[3]   Enhanced mRNA cap methylation increases Cyclin D1 expression and promotes cell transformation [J].
Cowling, V. H. .
ONCOGENE, 2010, 29 (06) :930-936
[4]   The Myc transactivation domain promotes global phosphorylation of the RNA polymerase II carboxy-terminal domain independently of direct DNA binding [J].
Cowling, Victoria H. ;
Cole, Michael D. .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (06) :2059-2073
[5]   Regulation of mRNA cap methylation [J].
Cowling, Victoria H. .
BIOCHEMICAL JOURNAL, 2010, 425 :295-302
[6]   Structural insights into the mechanism and evolution of the vaccinia virus mRNA cap N7 methyl-transferase [J].
De la Pena, Marcos ;
Kyrieleis, Otto J. P. ;
Cusack, Stephen .
EMBO JOURNAL, 2007, 26 (23) :4913-4925
[7]   How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes [J].
Doamekpor, Selom K. ;
Sanchez, Ana M. ;
Schwer, Beate ;
Shuman, Stewart ;
Lima, Christopher D. .
GENES & DEVELOPMENT, 2014, 28 (12) :1323-1336
[8]   Structure and mechanism of mRNA cap (guanine-N7) methyltransferase [J].
Fabrega, C ;
Hausmann, S ;
Shen, V ;
Shuman, S ;
Lima, CD .
MOLECULAR CELL, 2004, 13 (01) :77-89
[9]   S-Adenosyl Homocysteine Hydrolase Is Required for Myc-Induced mRNA Cap Methylation, Protein Synthesis, and Cell Proliferation [J].
Fernandez-Sanchez, Maria Elena ;
Gonatopoulos-Pournatzis, Thomas ;
Preston, Gavin ;
Lawlor, Margaret A. ;
Cowling, Victoria H. .
MOLECULAR AND CELLULAR BIOLOGY, 2009, 29 (23) :6182-6191
[10]   Structural Insights to How Mammalian Capping Enzyme Reads the CTD Code [J].
Ghosh, Agnidipta ;
Shuman, Stewart ;
Lima, Christopher D. .
MOLECULAR CELL, 2011, 43 (02) :299-310