Temperature dependence of protein folding kinetics in living cells
被引:106
作者:
Guo, Minghao
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL 61801 USAUniv Illinois, Dept Phys, Urbana, IL 61801 USA
Guo, Minghao
[1
]
Xu, Yangfan
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USAUniv Illinois, Dept Phys, Urbana, IL 61801 USA
Xu, Yangfan
[2
]
Gruebele, Martin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL 61801 USA
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Phys, Urbana, IL 61801 USA
Gruebele, Martin
[1
,3
,4
]
机构:
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[4] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
activation barrier;
fluorescence microscopy;
Forster resonance energy transfer (FRET);
green fluorescent protein (GFP);
thermal denaturation;
REFOLDING KINETICS;
ENERGY LANDSCAPE;
STABILITY;
DYNAMICS;
DIFFUSION;
PATHWAYS;
STATE;
D O I:
10.1073/pnas.1201797109
中图分类号:
O [数理科学和化学];
P [天文学、地球科学];
Q [生物科学];
N [自然科学总论];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
We measure the stability and folding rate of a mutant of the enzyme phosphoglycerate kinase (PGK) inside bone tissue cells as a function of temperature from 38 to 48 degrees C. To facilitate measurement in individual living cells, we developed a rapid laser temperature stepping method capable of measuring complete thermal melts and kinetic traces in about two min. We find that this method yields improved thermal melts compared to heating a sample chamber or microscope stage. By comparing results for six cells with in vitro data, we show that the protein is stabilized by about 6 kJ/mole in the cytoplasm, but the temperature dependence of folding kinetics is similar to in vitro. The main difference is a slightly steeper temperature dependence of the folding rate in some cells that can be rationalized in terms of temperature-dependent crowding, local viscosity, or hydrophobicity. The observed rate coefficients can be fitted within measurement uncertainty by an effective two-state model, even though PGK folds by a multistate mechanism. We validate the effective two-state model with a three-state free energy landscape of PGK to illustrate that the effective fitting parameters can represent a more complex underlying free energy landscape.
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, A.
;
Girdhar, K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Girdhar, K.
;
Singh, D.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Singh, D.
;
Gelman, H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Gelman, H.
;
Ebbinghaus, S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, S.
;
Gruebele, M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, Apratim
;
Ebbinghaus, Simon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, Simon
;
Shen, Zhen
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Cell & Dev Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Shen, Zhen
;
Mishra, Tripta
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Cell & Dev Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Mishra, Tripta
;
Gruebele, Martin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, Apratim
;
Samiotakis, Antonios
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Samiotakis, Antonios
;
Ebbinghaus, Simon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, Simon
;
Nienhaus, Lea
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Nienhaus, Lea
;
Homouz, Dirar
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Homouz, Dirar
;
Gruebele, Martin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Gruebele, Martin
;
Cheung, Margaret S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USAUniv Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
Duan, Y
;
Kollman, PA
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USAUniv Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, A.
;
Girdhar, K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Girdhar, K.
;
Singh, D.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Singh, D.
;
Gelman, H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Gelman, H.
;
Ebbinghaus, S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, S.
;
Gruebele, M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, Apratim
;
Ebbinghaus, Simon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, Simon
;
Shen, Zhen
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Cell & Dev Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Shen, Zhen
;
Mishra, Tripta
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Cell & Dev Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Mishra, Tripta
;
Gruebele, Martin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Dhar, Apratim
;
Samiotakis, Antonios
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Samiotakis, Antonios
;
Ebbinghaus, Simon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Ebbinghaus, Simon
;
Nienhaus, Lea
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Nienhaus, Lea
;
Homouz, Dirar
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Homouz, Dirar
;
Gruebele, Martin
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem, Urbana, IL 61801 USA
Univ Illinois, Dept Phys, Urbana, IL 61801 USA
Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
Gruebele, Martin
;
Cheung, Margaret S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Houston, Dept Phys, Houston, TX 77204 USAUniv Illinois, Dept Chem, Urbana, IL 61801 USA
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USAUniv Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
Duan, Y
;
Kollman, PA
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USAUniv Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA