Temperature dependence of protein folding kinetics in living cells

被引:106
作者
Guo, Minghao [1 ]
Xu, Yangfan [2 ]
Gruebele, Martin [1 ,3 ,4 ]
机构
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[4] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
基金
美国国家科学基金会;
关键词
activation barrier; fluorescence microscopy; Forster resonance energy transfer (FRET); green fluorescent protein (GFP); thermal denaturation; REFOLDING KINETICS; ENERGY LANDSCAPE; STABILITY; DYNAMICS; DIFFUSION; PATHWAYS; STATE;
D O I
10.1073/pnas.1201797109
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We measure the stability and folding rate of a mutant of the enzyme phosphoglycerate kinase (PGK) inside bone tissue cells as a function of temperature from 38 to 48 degrees C. To facilitate measurement in individual living cells, we developed a rapid laser temperature stepping method capable of measuring complete thermal melts and kinetic traces in about two min. We find that this method yields improved thermal melts compared to heating a sample chamber or microscope stage. By comparing results for six cells with in vitro data, we show that the protein is stabilized by about 6 kJ/mole in the cytoplasm, but the temperature dependence of folding kinetics is similar to in vitro. The main difference is a slightly steeper temperature dependence of the folding rate in some cells that can be rationalized in terms of temperature-dependent crowding, local viscosity, or hydrophobicity. The observed rate coefficients can be fitted within measurement uncertainty by an effective two-state model, even though PGK folds by a multistate mechanism. We validate the effective two-state model with a three-state free energy landscape of PGK to illustrate that the effective fitting parameters can represent a more complex underlying free energy landscape.
引用
收藏
页码:17863 / 17867
页数:5
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