Dynamics of a self-avoiding polymer chain in slit, tube, and cube confinements

被引:24
作者
Cui, Ting [1 ]
Ding, Jiandong [1 ]
Chen, Jeff Z. Y. [2 ]
机构
[1] Fudan Univ, Adv Mat Lab, Dept Macromol Sci, Key Lab Mol Engn Polymers,Minist Educ, Shanghai 200433, Peoples R China
[2] Univ Waterloo, Dept Phys & Astron, Waterloo, ON N2L 3G1, Canada
来源
PHYSICAL REVIEW E | 2008年 / 78卷 / 06期
基金
加拿大自然科学与工程研究理事会;
关键词
Monte Carlo methods; polymers;
D O I
10.1103/PhysRevE.78.061802
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Monte Carlo simulations are presented for the observation of the dynamics of a self-avoiding polymer in three types of confinement: slit, tube, and cube. We pay special attention to the parameter regime where the characteristic confinement dimension is smaller than the radius of gyration of the unconfined polymer. On the basis of the bond-fluctuation model, we measured the rotation time of the end-to-end vector of the polymer, the diffusion time for the center of the polymer to move a distance comparable to the root mean square end-to-end distance, and the looping time for the ends of the polymer to approach each other from an open position. As functions of the confinement width and polymer length, these three time scales are discussed in light of scaling theories.
引用
收藏
页数:7
相关论文
共 43 条
  • [1] Diffusion/reaction in confined polymer chains
    Abrams, Cameron F.
    Lee, Nam-Kyung
    Johner, A.
    [J]. MACROMOLECULES, 2006, 39 (10) : 3655 - 3663
  • [2] Unexpected relaxation dynamics of a self-avoiding polymer in cylindrical confinement
    Arnold, Axel
    Bozorgui, Behnaz
    Frenkel, Daan
    Ha, Bae-Yeun
    Jun, Suckjon
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (16)
  • [3] Polymer chains in a soft nanotube: A Monte Carlo Study
    Avramova, K
    Milchev, A
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (02)
  • [4] Double-stranded DNA diffusion in slitlike nanochannels
    Balducci, Anthony
    Mao, Pan
    Han, Jongyoon
    Doyle, Patrick S.
    [J]. MACROMOLECULES, 2006, 39 (18) : 6273 - 6281
  • [5] Binder K., 1988, MONTE CARLO SIMULATI
  • [6] DYNAMICS OF CONFINED POLYMER-CHAINS
    BROCHARD, F
    DEGENNES, PG
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1977, 67 (01) : 52 - 56
  • [7] Free energy of a long, flexible, self-avoiding polymer chain in a tube
    Burkhardt, TW
    Guim, I
    [J]. PHYSICAL REVIEW E, 1999, 59 (05): : 5833 - 5838
  • [8] THE BOND FLUCTUATION METHOD - A NEW EFFECTIVE ALGORITHM FOR THE DYNAMICS OF POLYMERS IN ALL SPATIAL DIMENSIONS
    CARMESIN, I
    KREMER, K
    [J]. MACROMOLECULES, 1988, 21 (09) : 2819 - 2823
  • [9] Molecular crowding enhances native state stability and refolding rates of globular proteins
    Cheung, MS
    Klimov, D
    Thirumalai, D
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (13) : 4753 - 4758
  • [10] Direct observation of biaxial confinement of a semiflexible filament in a channel
    Choi, MC
    Santangelo, CD
    Pelletier, O
    Kim, JH
    Kwon, SY
    Wen, Z
    Li, Y
    Pincus, PA
    Safinya, CR
    Kim, MW
    [J]. MACROMOLECULES, 2005, 38 (23) : 9882 - 9884