Family specific rates of protein evolution

被引:18
作者
Luz, H [1 ]
Vingron, M [1 ]
机构
[1] Max Planck Inst Mol Genet, D-14195 Berlin, Germany
关键词
D O I
10.1093/bioinformatics/btl073
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Amino acid changing mutations in proteins are contstrained by purifying selection and accumulate at different rates. We estimate evolutionary rates on multiple alignments of eukaryotic protein families in a maximum likelihood framework and spot sets of slow and fast evolving proteins. Results: We find that the evolution of indispensable proteins is constrained by selection and that protein secretion is coupled to an increased evolutionary rate.
引用
收藏
页码:1166 / 1171
页数:6
相关论文
共 30 条
[1]   The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint [J].
Castillo-Davis, CI ;
Kondrashov, FA ;
Hartl, DL ;
Kulathinal, RJ .
GENOME RESEARCH, 2004, 14 (05) :802-811
[2]   Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans [J].
Cutter, AD ;
Payseur, BA ;
Salcedo, T ;
Estes, AM ;
Good, JM ;
Wood, E ;
Hartl, T ;
Maughan, H ;
Strempel, J ;
Wang, BM ;
Bryan, AC ;
Dellos, M .
GENOME RESEARCH, 2003, 13 (12) :2651-2657
[3]   Preferential duplication of conserved proteins in eukaryotic genomes [J].
Davis, JC ;
Petrov, DA .
PLOS BIOLOGY, 2004, 2 (03) :318-326
[4]   Profile hidden Markov models [J].
Eddy, SR .
BIOINFORMATICS, 1998, 14 (09) :755-763
[5]  
Efron B., 1994, INTRO BOOTSTRAP, DOI DOI 10.1201/9780429246593
[6]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[7]  
Felsenstein Joseph, 2004, Inferring_phylogenies, V2
[8]   Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks [J].
Hahn, MW ;
Kern, AD .
MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (04) :803-806
[9]   The origin and evolution of model organisms [J].
Hedges, SB .
NATURE REVIEWS GENETICS, 2002, 3 (11) :838-849
[10]   Protein dispensability and rate of evolution [J].
Hirsh, AE ;
Fraser, HB .
NATURE, 2001, 411 (6841) :1046-1049