Fibril Surface-Dependent Amyloid Precursors Revealed by Coarse-Grained Molecular Dynamics Simulation (vol 8, 719320, 2021)

被引：0
|
作者：
Ma, Yuan-Wei [1 ]
Lin, Tong-You [1 ]
Tsai, Min-Yeh [1 ]
机构：
[1] Tamkang Univ, Dept Chem, New Taipei City, Taiwan
来源：
FRONTIERS IN MOLECULAR BIOSCIENCES | 2022年 / 9卷
关键词：
abeta; MD simulation; coarse-grained model; fibril surface; secondary nucleation; fibrillar twisting; binding sites; elongation (growth);
D O I：
10.3389/fmolb.2022.944884
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页数：3
相关论文
共 50 条
  • [1] Fibril Surface-Dependent Amyloid Precursors Revealed by Coarse-Grained Molecular Dynamics Simulation
    Ma, Yuan-Wei
    Lin, Tong-You
    Tsai, Min-Yeh
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8
  • [2] Coarse-Grained Simulation Approach for Analyzing Amyloid Fibril Stability and Folding Dynamics
    Chen, Jie
    PROTEIN SCIENCE, 2024, 33 : 79 - 79
  • [3] Elucidating Important Sites and the Mechanism for Amyloid Fibril Formation by Coarse-Grained Molecular Dynamics
    Rojas, Ana
    Maisuradze, Nika
    Kachlishvili, Khatuna
    Scheraga, Harold A.
    Maisuradze, Gia G.
    ACS CHEMICAL NEUROSCIENCE, 2017, 8 (01): : 201 - 209
  • [4] Coarse-grained molecular dynamics simulation of polymers: Structures and dynamics
    Shi, Rui
    Qian, Hu-Jun
    Lu, Zhong-Yuan
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2023, 13 (06)
  • [5] Assembly of lipoproteins revealed by coarse-grained molecular dynamics simulations
    Shih, Amy Y.
    Freddolino, Peter L.
    Arkhipov, Anton
    Schulten, Klaus
    BIOPHYSICAL JOURNAL, 2007, : 250A - 250A
  • [6] Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation
    Yu, Hang
    Han, Wei
    Ma, Wen
    Schulten, Klaus
    JOURNAL OF CHEMICAL PHYSICS, 2015, 143 (24):
  • [7] IBIsCO: A Molecular Dynamics Simulation Package for Coarse-Grained Simulation
    Karimi-Varzaneh, Hossein Ali
    Qian, Hu-Jun
    Chen, Xiaoyu
    Carbone, Paola
    Mueller-Plathe, Florian
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32 (07) : 1475 - 1487
  • [8] Assembly of Amyloid β Peptides in the Presence of Fibril Seeds: One-Pot Coarse-Grained Molecular Dynamics Simulations
    Xu, Liang
    Chen, Yonggang
    Wang, Xiaojuan
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (31): : 9238 - 9246
  • [9] Molecular mechanism of cationic antiseptics action revealed by coarse-grained molecular dynamics
    Kholina, E.
    Orekhov, P.
    Kovalenko, I.
    Strakhovskaya, M.
    FEBS OPEN BIO, 2021, 11 : 347 - 348
  • [10] Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations
    Shih, Amy Y.
    Freddolino, Peter L.
    Arkhipov, Anton
    Schulten, Klaus
    JOURNAL OF STRUCTURAL BIOLOGY, 2007, 157 (03) : 579 - 592
12345