Rapid Transcription Fosters Coordinate snail Expression in the Drosophila Embryo

被引:49
作者
Boettiger, Alistair Nicol [1 ]
Levine, Michael [2 ]
机构
[1] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[2] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
基金
美国国家卫生研究院;
关键词
GENE-EXPRESSION; IN-VIVO; NOISE; PATTERNS; TWIST;
D O I
10.1016/j.celrep.2012.12.015
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Transcription is commonly held to be a highly stochastic process, resulting in considerable heterogeneity of gene expression among the different cells in a population. Here, we employ quantitative in situ hybridization methods coupled with high-resolution imaging assays to measure the expression of snail, a developmental patterning gene necessary for coordinating the invagination of the mesoderm during gastrulation of the Drosophila embryo. Our measurements of steady-state mRNAs suggest that there is very little variation in snail expression across the different cells that make up the mesoderm and that synthesis approaches the kinetic limits of Pol II processivity. We propose that rapid transcription kinetics and negative autoregulation are responsible for the remarkable homogeneity of snail expression and the coordination of mesoderm invagination.
引用
收藏
页码:8 / 15
页数:8
相关论文
共 24 条
[1]   Tracking rates of transcription and splicing in vivo [J].
Ardehali, M. Behfar ;
Lis, John T. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (11) :1123-1124
[2]   Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability [J].
Boettiger, Alistair N. ;
Ralph, Peter L. ;
Evans, Steven N. .
PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (05)
[3]   Synchronous and Stochastic Patterns of Gene Activation in the Drosophila Embryo [J].
Boettiger, Alistair N. ;
Levine, Michael .
SCIENCE, 2009, 325 (5939) :471-473
[4]   In vivo dynamics of RNA polymerase II transcription [J].
Darzacq, Xavier ;
Shav-Tal, Yaron ;
de Turris, Valeria ;
Brody, Yehuda ;
Shenoy, Shailesh M. ;
Phair, Robert D. ;
Singer, Robert H. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (09) :796-806
[5]   APICAL LOCALIZATION OF PAIR-RULE TRANSCRIPTS REQUIRES 3' SEQUENCES AND LIMITS PROTEIN DIFFUSION IN THE DROSOPHILA BLASTODERM EMBRYO [J].
DAVIS, I ;
ISHHOROWICZ, D .
CELL, 1991, 67 (05) :927-940
[6]   Real-time kinetics of gene activity in individual bacteria [J].
Golding, I ;
Paulsson, J ;
Zawilski, SM ;
Cox, EC .
CELL, 2005, 123 (06) :1025-1036
[7]   Single-molecule transcript counting of stem-cell markers in the mouse intestine [J].
Itzkovitz, Shalev ;
Lyubimova, Anna ;
Blat, Irene C. ;
Maynard, Mindy ;
van Es, Johan ;
Lees, Jacqueline ;
Jacks, Tyler ;
Clevers, Hans ;
van Oudenaarden, Alexander .
NATURE CELL BIOLOGY, 2012, 14 (01) :106-U193
[8]   Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination [J].
Klumpp, Stefan ;
Hwa, Terence .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (47) :18159-18164
[9]   ESTABLISHMENT OF THE MESODERM-NEUROECTODERM BOUNDARY IN THE DROSOPHILA EMBRYO [J].
KOSMAN, D ;
IP, YT ;
LEVINE, M ;
ARORA, K .
SCIENCE, 1991, 254 (5028) :118-122