Soil-Borne Bacterial Structure and Diversity Does Not Reflect Community Activity in Pampa Biome

被引:46
作者
Lupatini, Manoeli [1 ]
Ahmad Suleiman, Afnan Khalil [1 ]
Seminoti Jacques, Rodrigo Josemar [1 ]
Antoniolli, Zaida Ines [1 ]
Kuramae, Eiko Eurya [2 ]
de Oliveira Camargo, Flavio Anastacio [3 ]
Wuerdig Roesch, Luiz Fernando [4 ]
机构
[1] Univ Fed Santa Maria, Dept Solos, BR-97119900 Santa Maria, RS, Brazil
[2] Netherlands Inst Ecol NIOO KANW, Dept Microbial Ecol, Wageningen, Netherlands
[3] Univ Fed Rio Grande do Sul, Dept Solos, Porto Alegre, RS, Brazil
[4] Univ Fed PAMPA, Sao Gabriel, RS, Brazil
关键词
LAND-USE; MICROBIAL COMMUNITIES; FUNGAL COMMUNITIES; ENZYME-ACTIVITIES; PSEUDOREPLICATION; PH;
D O I
10.1371/journal.pone.0076465
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The Pampa biome is considered one of the main hotspots of the world's biodiversity and it is estimated that half of its original vegetation was removed and converted to agricultural land and tree plantations. Although an increasing amount of knowledge is being assembled regarding the response of soil bacterial communities to land use change, to the associated plant community and to soil properties, our understanding about how these interactions affect the microbial community from the Brazilian Pampa is still poor and incomplete. In this study, we hypothesized that the same soil type from the same geographic region but under distinct land use present dissimilar soil bacterial communities. To test this hypothesis, we assessed the soil bacterial communities from four land-uses within the same soil type by 454-pyrosequencing of 16S rRNA gene and by soil microbial activity analyzes. We found that the same soil type under different land uses harbor similar (but not equal) bacterial communities and the differences were controlled by many microbial taxa. No differences regarding diversity and richness between natural areas and areas under anthropogenic disturbance were detected. However, the measures of microbial activity did not converge with the 16S rRNA data supporting the idea that the coupling between functioning and composition of bacterial communities is not necessarily correlated.
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页数:9
相关论文
共 64 条
[1]   Shifts in soil bacterial community after eight years of land-use change [J].
Ahmad Suleiman, Afnan Khalil ;
Manoeli, Lupatini ;
Boldo, Juliano Tomazzoni ;
Pereira, Marcos G. ;
Wurdig Roesch, Luiz Fernando .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2013, 36 (02) :137-144
[2]   Resistance, resilience, and redundancy in microbial communities [J].
Allison, Steven D. ;
Martiny, Jennifer B. H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 :11512-11519
[3]   Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies [J].
Baker, Kate L. ;
Langenheder, Silke ;
Nicol, Graeme W. ;
Ricketts, Dean ;
Killham, Kenneth ;
Campbell, Colin D. ;
Prosser, James I. .
SOIL BIOLOGY & BIOCHEMISTRY, 2009, 41 (11) :2292-2298
[4]  
Brazilian Institute of Geography and Statistics - IBGE, 2004, MAP VEG BRAZ MAP BIO
[5]   The structure of microbial communities in soil and the lasting impact of cultivation [J].
Buckley, DH ;
Schmidt, TM .
MICROBIAL ECOLOGY, 2001, 42 (01) :11-21
[6]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[7]   KiNG (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program [J].
Chen, Vincent B. ;
Davis, Ian W. ;
Richardson, David C. .
PROTEIN SCIENCE, 2009, 18 (11) :2403-2409
[8]   NONPARAMETRIC MULTIVARIATE ANALYSES OF CHANGES IN COMMUNITY STRUCTURE [J].
CLARKE, KR .
AUSTRALIAN JOURNAL OF ECOLOGY, 1993, 18 (01) :117-143
[9]   Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Larsen, N. ;
Rojas, M. ;
Brodie, E. L. ;
Keller, K. ;
Huber, T. ;
Dalevi, D. ;
Hu, P. ;
Andersen, G. L. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (07) :5069-5072
[10]   CONSERVATION EVALUATION AND PHYLOGENETIC DIVERSITY [J].
FAITH, DP .
BIOLOGICAL CONSERVATION, 1992, 61 (01) :1-10