Genome-Wide Identification of the Invertase Gene Family in Populus

被引:59
作者
Chen, Zhong [1 ,2 ]
Gao, Kai [1 ,2 ]
Su, Xiaoxing [3 ]
Rao, Pian [1 ,2 ]
An, Xinmin [1 ,2 ]
机构
[1] Beijing Forestry Univ, Coll Biol Sci & Biotechnol, Natl Engn Lab Tree Breeding, Beijing, Peoples R China
[2] Beijing Forestry Univ, Coll Biol Sci & Biotechnol, Minist Educ, Key Lab Genet & Breeding Forest Trees & Ornamenta, Beijing, Peoples R China
[3] Beijing Berry Genom Co Ltd, Beijing, Peoples R China
来源
PLOS ONE | 2015年 / 10卷 / 09期
基金
中国国家自然科学基金; 国家高技术研究发展计划(863计划);
关键词
BETA-FRUCTOSIDASE; DIFFERENTIAL EXPRESSION; SUCROSE; POPLAR; ACCUMULATION; ARABIDOPSIS; EVOLUTION; PLANTS; GROWTH; FRUCTOFURANOSIDASE;
D O I
10.1371/journal.pone.0138540
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (PtCWINV1-5), 3 vacuolar invertase genes (PtVINV1-3) and 16 neutral/alkaline invertase genes (PtNINV1-16) were identified in the Populus genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the Populus invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in Populus and other woody perennials.
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页数:21
相关论文
共 57 条
[1]   The three-dimensional structure of invertase (β-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases [J].
Alberto, F ;
Bignon, C ;
Sulzenbacher, G ;
Henrissat, B ;
Czjzek, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (18) :18903-18910
[2]  
Balakirev ES, 2003, GENETICS, V164, P533
[3]   Rapid stalk elongation in tulip (Tulipa gesneriana L. cv. Apeldoorn) and the combined action of cold-induced invertase and the water-channel protein γTIP [J].
Balk, PA ;
de Boer, AD .
PLANTA, 1999, 209 (03) :346-354
[4]   Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus [J].
Barakat, Abdelali ;
Choi, Alex ;
Yassin, Norzawani Buang M. ;
Park, Joseph S. ;
Sun, Zichao ;
Carlson, John E. .
GENE, 2011, 479 (1-2) :37-46
[5]   The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression [J].
Barakat, Abdelali ;
Bagniewska-Zadworna, Agnieszka ;
Choi, Alex ;
Plakkat, Urmila ;
DiLoreto, Denis S. ;
Yellanki, Priyadarshini ;
Carlson, John E. .
BMC PLANT BIOLOGY, 2009, 9
[6]   ACCUMULATION OF BETA-FRUCTOSIDASE IN THE CELL-WALLS OF TOMATO ROOTS FOLLOWING INFECTION BY A FUNGAL WILT PATHOGEN [J].
BENHAMOU, N ;
GRENIER, J ;
CHRISPEELS, MJ .
PLANT PHYSIOLOGY, 1991, 97 (02) :739-750
[7]   Evolution and diversity of invertase genes in Populus trichocarpa [J].
Bocock, Philip N. ;
Morse, Alison M. ;
Dervinis, Christopher ;
Davis, John M. .
PLANTA, 2008, 227 (03) :565-576
[8]   Exon skipping induced by cold stress in a potato invertase gene transcript [J].
Bournay, AS ;
Hedley, PE ;
Maddison, A ;
Waugh, R ;
Machray, GC .
NUCLEIC ACIDS RESEARCH, 1996, 24 (12) :2347-2351
[9]   Poplar genome sequence: functional genomics in an ecologically dominant plant species [J].
Brunner, AM ;
Busov, VB ;
Strauss, SH .
TRENDS IN PLANT SCIENCE, 2004, 9 (01) :49-56
[10]   Heterologous expression and functional characterization of two hybrid poplar cell-wall invertases [J].
Canam, Thomas ;
Unda, Faride ;
Mansfield, Shawn D. .
PLANTA, 2008, 228 (06) :1011-1019