From candidate gene studies to GWAS and post-GWAS analyses in breast cancer

被引:72
作者
Fachal, Laura [1 ,2 ]
Dunning, Alison M. [1 ]
机构
[1] Univ Cambridge, Ctr Canc Genet Epidemiol, Dept Oncol, Cambridge CB1 8RN, England
[2] Univ Santiago de Compostela, CIBERER, Genom Med Grp, Santiago De Compostela 15706, Spain
关键词
GENOME-WIDE ASSOCIATION; MAMMARY-GLAND DEVELOPMENT; SUSCEPTIBILITY LOCI; CONFER SUSCEPTIBILITY; COMMON VARIANTS; OVARIAN-CANCER; RISK VARIANT; IDENTIFIES; MUTATIONS; ALLELES;
D O I
10.1016/j.gde.2015.01.004
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
There are now more than 90 established breast cancer risk loci, with 57 new ones, revealed through genome-wide-association studies (GWAS) during the last two years. Established high, moderate and low penetrance genetic variants currently explain similar to 49% of familial breast cancer risk. GWAS-discovered variants account for 14%, and it is estimated that another 1000 yet-to-be-discovered loci could contribute an additional 14% of familial risk. Polygenic risk scores can already be used to stratify breast cancer risk in the female population and could improve the targeting of mammographic screening programmes, which are at present largely based on age-specific risks. Fine-scale mapping and functional analyses are revealing candidate causal variants and the molecular mechanisms by which GWAS-hits may act. Better-powered GWAS and genome-wide sequencing projects are likely to continue identifying new breast cancer causal variants.
引用
收藏
页码:32 / 41
页数:10
相关论文
共 74 条
[1]   Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2 [J].
Ahmed, Shahana ;
Thomas, Gilles ;
Ghoussaini, Maya ;
Healey, Catherine S. ;
Humphreys, Manjeet K. ;
Platte, Radka ;
Morrison, Jonathan ;
Maranian, Melanie ;
Pooley, Karen A. ;
Luben, Robert ;
Eccles, Diana ;
Evans, D. Gareth ;
Fletcher, Olivia ;
Johnson, Nichola ;
Silva, Isabel dos Santos ;
Peto, Julian ;
Stratton, Michael R. ;
Rahman, Nazneen ;
Jacobs, Kevin ;
Prentice, Ross ;
Anderson, Garnet L. ;
Rajkovic, Aleksandar ;
Curb, J. David ;
Ziegler, Regina G. ;
Berg, Christine D. ;
Buys, Saundra S. ;
McCarty, Catherine A. ;
Feigelson, Heather Spencer ;
Calle, Eugenia E. ;
Thun, Michael J. ;
Diver, W. Ryan ;
Bojesen, Stig ;
Nordestgaard, Borge G. ;
Flyger, Henrik ;
Doerk, Thilo ;
Schuermann, Peter ;
Hillemanns, Peter ;
Karstens, Johann H. ;
Bogdanova, Natalia V. ;
Antonenkova, Natalia N. ;
Zalutsky, Iosif V. ;
Bermisheva, Marina ;
Fedorova, Sardana ;
Khusnutdinova, Elza ;
Kang, Daehee ;
Yoo, Keun-Young ;
Noh, Dong Young ;
Ahn, Sei-Hyun ;
Devilee, Peter ;
van Asperen, Christi J. .
NATURE GENETICS, 2009, 41 (05) :585-590
[2]  
[Anonymous], 2014, Nat Commun, P4
[3]   A locus on 19p13 modifies risk of breast cancer in BRCA1 mutation carriers and is associated with hormone receptor-negative breast cancer in the general population [J].
Antoniou, Antonis C. ;
Wang, Xianshu ;
Fredericksen, Zachary S. ;
McGuffog, Lesley ;
Tarrell, Robert ;
Sinilnikova, Olga M. ;
Healey, Sue ;
Morrison, Jonathan ;
Kartsonaki, Christiana ;
Lesnick, Timothy ;
Ghoussaini, Maya ;
Barrowdale, Daniel ;
Peock, Susan ;
Cook, Margaret ;
Oliver, Clare ;
Frost, Debra ;
Eccles, Diana ;
Evans, D. Gareth ;
Eeles, Ros ;
Izatt, Louise ;
Chu, Carol ;
Douglas, Fiona ;
Paterson, Joan ;
Stoppa-Lyonnet, Dominique ;
Houdayer, Claude ;
Mazoyer, Sylvie ;
Giraud, Sophie ;
Lasset, Christine ;
Remenieras, Audrey ;
Caron, Olivier ;
Hardouin, Agnes ;
Berthet, Pascaline ;
Hogervorst, Frans B. L. ;
Rookus, Matti A. ;
Jager, Agnes ;
van den Ouweland, Ans ;
Hoogerbrugge, Nicoline ;
van der Luijt, Rob B. ;
Meijers-Heijboer, Hanne ;
Garcia, Encarna B. Gomez ;
Devilee, Peter ;
Vreeswijk, Maaike P. G. ;
Lubinski, Jan ;
Jakubowska, Anna ;
Gronwald, Jacek ;
Huzarski, Tomasz ;
Byrski, Tomasz ;
Gorski, Bohdan ;
Cybulski, Cezary ;
Spurdle, Amanda B. .
NATURE GENETICS, 2010, 42 (10) :885-+
[4]   Snm1B/Apollo mediates replication fork collapse and S Phase checkpoint activation in response to DNA interstrand cross-links [J].
Bae, J-B ;
Mukhopadhyay, S. S. ;
Liu, L. ;
Zhang, N. ;
Tan, J. ;
Akhter, S. ;
Liu, X. ;
Shen, X. ;
Li, L. ;
Legerski, R. J. .
ONCOGENE, 2008, 27 (37) :5045-5056
[5]   iCOGS collection provides a collaborative model FOREWORD [J].
Bahcall, Orli G. .
NATURE GENETICS, 2013, 45 (04) :343-343
[6]   Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer [J].
Bojesen, Stig E. ;
Pooley, Karen A. ;
Johnatty, Sharon E. ;
Beesley, Jonathan ;
Michailidou, Kyriaki ;
Tyrer, Jonathan P. ;
Edwards, Stacey L. ;
Pickett, Hilda A. ;
Shen, Howard C. ;
Smart, Chanel E. ;
Hillman, Kristine M. ;
Mai, Phuong L. ;
Lawrenson, Kate ;
Stutz, Michael D. ;
Lu, Yi ;
Karevan, Rod ;
Woods, Nicholas ;
Johnston, Rebecca L. ;
French, Juliet D. ;
Chen, Xiaoqing ;
Weischer, Maren ;
Nielsen, Sune F. ;
Maranian, Melanie J. ;
Ghoussaini, Maya ;
Ahmed, Shahana ;
Baynes, Caroline ;
Bolla, Manjeet K. ;
Wang, Qin ;
Dennis, Joe ;
McGuffog, Lesley ;
Barrowdale, Daniel ;
Lee, Andrew ;
Healey, Sue ;
Lush, Michael ;
Tessier, Daniel C. ;
Vincent, Daniel ;
Bacot, Francis ;
Vergote, Ignace ;
Lambrechts, Sandrina ;
Despierre, Evelyn ;
Risch, Harvey A. ;
Gonzalez-Neira, Anna ;
Rossing, Mary Anne ;
Pita, Guillermo ;
Doherty, Jennifer A. ;
Alvarez, Nuria ;
Larson, Melissa C. ;
Fridley, Brooke L. ;
Schoof, Nils ;
Chang-Claude, Jenny .
NATURE GENETICS, 2013, 45 (04) :371-384
[7]   Public health implications from COGS and potential for risk stratification and screening [J].
Burton, Hilary ;
Chowdhury, Susmita ;
Dent, Tom ;
Hall, Alison ;
Pashayan, Nora ;
Pharoah, Paul .
NATURE GENETICS, 2013, 45 (04) :349-351
[8]   Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1 [J].
Cai, Qiuyin ;
Zhang, Ben ;
Sung, Hyuna ;
Low, Siew-Kee ;
Kweon, Sun-Seog ;
Lu, Wei ;
Shi, Jiajun ;
Long, Jirong ;
Wen, Wanqing ;
Choi, Ji-Yeob ;
Noh, Dong-Young ;
Shen, Chen-Yang ;
Matsuo, Keitaro ;
Teo, Soo-Hwang ;
Kim, Mi Kyung ;
Khoo, Ui Soon ;
Iwasaki, Motoki ;
Hartman, Mikael ;
Takahashi, Atsushi ;
Ashikawa, Kyota ;
Matsuda, Koichi ;
Shin, Min-Ho ;
Park, Min Ho ;
Zheng, Ying ;
Xiang, Yong-Bing ;
Ji, Bu-Tian ;
Park, Sue K. ;
Wu, Pei-Ei ;
Hsiung, Chia-Ni ;
Ito, Hidemi ;
Kasuga, Yoshio ;
Kang, Peter ;
Mariapun, Shivaani ;
Ahn, Sei Hyun ;
Kang, Han Sung ;
Chan, Kelvin Y. K. ;
Man, Ellen P. S. ;
Iwata, Hiroji ;
Tsugane, Shoichiro ;
Miao, Hui ;
Liao, Jiemin ;
Nakamura, Yusuke ;
Kubo, Michiaki ;
Delahanty, Ryan J. ;
Zhang, Yanfeng ;
Li, Bingshan ;
Li, Chun ;
Gao, Yu-Tang ;
Shu, Xiao-Ou ;
Kang, Daehee .
NATURE GENETICS, 2014, 46 (08) :886-890
[9]   Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium [J].
Cai, Qiuyin ;
Long, Jirong ;
Lu, Wei ;
Qu, Shimian ;
Wen, Wanqing ;
Kang, Daehee ;
Lee, Ji-Young ;
Chen, Kexin ;
Shen, Hongbing ;
Shen, Chen-Yang ;
Sung, Hyuna ;
Matsuo, Keitaro ;
Haiman, Christopher A. ;
Khoo, Ui Soon ;
Ren, Zefang ;
Iwasaki, Motoki ;
Gu, Kai ;
Xiang, Yong-Bing ;
Choi, Ji-Yeob ;
Park, Sue K. ;
Zhang, Lina ;
Hu, Zhibin ;
Wu, Pei-Ei ;
Noh, Dong-Young ;
Tajima, Kazuo ;
Henderson, Brian E. ;
Chan, Kelvin Y. K. ;
Su, Fengxi ;
Kasuga, Yoshio ;
Wang, Wenjing ;
Cheng, Jia-Rong ;
Yoo, Keun-Young ;
Lee, Jong-Young ;
Zheng, Hong ;
Liu, Yao ;
Shieh, Ya-Lan ;
Kim, Sung-Won ;
Lee, Jong Won ;
Iwata, Hiroji ;
Le Marchand, Loic ;
Chan, Sum Yin ;
Xie, Xiaoming ;
Tsugane, Shoichiro ;
Lee, Min Hyuk ;
Wang, Shenming ;
Li, Guoliang ;
Levy, Shawn ;
Huang, Bo ;
Shi, Jiajun ;
Delahanty, Ryan .
HUMAN MOLECULAR GENETICS, 2011, 20 (24) :4991-4999
[10]   Distilling Pathophysiology from Complex Disease Genetics [J].
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Mootha, Vamsi K. .
CELL, 2013, 155 (01) :21-26