Human diseases through the lens of network biology

被引:149
作者
Furlong, Laura I. [1 ]
机构
[1] Univ Pompeu Fabra UPF, Res Programme Biomed Informat GRIB, Med Res Inst IMIM, Hosp del Mar, Barcelona 08003, Spain
关键词
systems biology; protein interaction networks; disease; personal genomes; translational bioinformatics; network biology; PROTEIN-INTERACTION NETWORKS; GENE-ENVIRONMENT INTERACTIONS; TOPOLOGICAL FEATURES; PATHWAYS; VISUALIZATION; COMPLEX; CANCER; INTEGRATION; EPISTASIS; CENTRALITY;
D O I
10.1016/j.tig.2012.11.004
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
One of the challenges raised by next generation sequencing (NGS) is the identification of clinically relevant mutations among all the genetic variation found in an individual. Network biology has emerged as an integrative and systems-level approach for the interpretation of genome data in the context of health and disease. Network biology can provide insightful models for genetic phenomena such as penetrance, epistasis, and modes of inheritance, all of which are integral aspects of Mendelian and complex diseases. Moreover, it can shed light on disease mechanisms via the identification of modules perturbed in those diseases. Current challenges include understanding disease as a result of the interplay between environmental and genetic perturbations and assessing the impact of personal sequence variations in the context of networks. Full realization of the potential of personal genomics will benefit from network biology approaches that aim to uncover the mechanisms underlying disease pathogenesis, identify new biomarkers, and guide personalized therapeutic interventions.
引用
收藏
页码:150 / 159
页数:10
相关论文
共 105 条
  • [1] Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks
    Agarwal, Sumeet
    Deane, Charlotte M.
    Porter, Mason A.
    Jones, Nick S.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (06) : 1 - 12
  • [2] A Network-Based Approach to Prioritize Results from Genome-Wide Association Studies
    Akula, Nirmala
    Baranova, Ancha
    Seto, Donald
    Solka, Jeffrey
    Nalls, Michael A.
    Singleton, Andrew
    Ferrucci, Luigi
    Tanaka, Toshiko
    Bandinelli, Stefania
    Cho, Yoon Shin
    Kim, Young Jin
    Lee, Jong-Young
    Han, Bok-Ghee
    McMahon, Francis J.
    [J]. PLOS ONE, 2011, 6 (09):
  • [3] Proof of Concept: Network and Systems Biology Approaches Aid in the Discovery of Potent Anticancer Drug Combinations
    Azmi, Asfar S.
    Wang, Zhiwei
    Philip, Philip A.
    Mohammad, Ramzi M.
    Sarkar, Fazlul H.
    [J]. MOLECULAR CANCER THERAPEUTICS, 2010, 9 (12) : 3137 - 3144
  • [4] Pathguide: a Pathway Resource List
    Bader, Gary D.
    Cary, Michael P.
    Sander, Chris
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D504 - D506
  • [5] A New Methodology to Associate SNPs with Human Diseases According to Their Pathway Related Context
    Bakir-Gungor, Burcu
    Sezerman, Osman Ugur
    [J]. PLOS ONE, 2011, 6 (10):
  • [6] A public resource facilitating clinical use of genomes
    Ball, Madeleine P.
    Thakuria, Joseph V.
    Zaranek, Alexander Wait
    Clegg, Tom
    Rosenbaum, Abraham M.
    Wu, Xiaodi
    Angrist, Misha
    Bhak, Jong
    Bobe, Jason
    Callow, Matthew J.
    Cano, Carlos
    Chou, Michael F.
    Chung, Wendy K.
    Douglas, Shawn M.
    Estep, Preston W.
    Gore, Athurva
    Hulick, Peter
    Labarga, Alberto
    Lee, Je-Hyuk
    Lunshof, Jeantine E.
    Kim, Byung Chul
    Kim, Jong-Il
    Li, Zhe
    Murray, Michael F.
    Nilsen, Geoffrey B.
    Peters, Brock A.
    Raman, Anugraha M.
    Rienhoff, Hugh Y.
    Robasky, Kimberly
    Wheeler, Matthew T.
    Vandewege, Ward
    Vorhaus, Daniel B.
    Yang, Joyce L.
    Yang, Luhan
    Aach, John
    Ashley, Euan A.
    Drmanac, Radoje
    Kim, Seong-Jin
    Li, Jin Billy
    Peshkin, Leonid
    Seidman, Christine E.
    Seo, Jeong-Sun
    Zhang, Kun
    Rehm, Heidi L.
    Church, George M.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (30) : 11920 - 11927
  • [7] Bastian M., 2009, INT AAAI C WEBLOGS S, P361, DOI [DOI 10.1609/ICWSM.V3I1.13937, 10.13140/2.1.1341.1520]
  • [8] Automatic Filtering and Substantiation of Drug Safety Signals
    Bauer-Mehren, Anna
    van Mullingen, Erik M.
    Avillach, Paul
    del Carmen Carrascosa, Maria
    Garcia-Serna, Ricard
    Pinero, Janet
    Singh, Bharat
    Lopes, Pedro
    Oliveira, Jose L.
    Diallo, Gayo
    Helgee, Ernst Ahlberg
    Boyer, Scott
    Mestres, Jordi
    Sanz, Ferran
    Kors, Jan A.
    Furlong, Laura I.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (04)
  • [9] Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases
    Bauer-Mehren, Anna
    Bundschus, Markus
    Rautschka, Michael
    Mayer, Miguel A.
    Sanz, Ferran
    Furlong, Laura I.
    [J]. PLOS ONE, 2011, 6 (06):
  • [10] From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways
    Bauer-Mehren, Anna
    Furlong, Laura I.
    Rautschka, Michael
    Sanz, Ferran
    [J]. BMC BIOINFORMATICS, 2009, 10