The importance of dynamics in integrative modeling of supramolecular assemblies

被引:16
|
作者
Tamo, Giorgio E.
Abriata, Luciano A.
Dal Peraro, Matteo [1 ]
机构
[1] Ecole Polytech Fed Lausanne, Sch Life Sci, Inst Bioengn, Lab Biomol Modeling, Lausanne, Switzerland
基金
瑞士国家科学基金会;
关键词
PROTEIN-PROTEIN DOCKING; NUCLEAR-PORE COMPLEX; CRYOELECTRON MICROSCOPY; MOLECULAR ARCHITECTURE; STRUCTURAL-CHARACTERIZATION; BIOMOLECULAR COMPLEXES; MASS-SPECTROMETRY; GAMMA-SECRETASE; CROSS-LINKING; MECHANISM;
D O I
10.1016/j.sbi.2015.02.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Revealing the atomistic architecture of supramolecular complexes is a fundamental step toward a deeper understanding of cellular functioning. To date, this formidable task is facilitated by an emerging array of integrative modeling approaches that combine experimental data from different sources. One major challenge these methods have to face is the treatment of the dynamic rearrangements of the individual subunits upon assembly. While this flexibility can be sampled at different levels, integrating native dynamic determinants with available experimental inputs can provide an effective way to reveal the molecular recognition mechanisms at the basis of supramolecular assembly.
引用
收藏
页码:28 / 34
页数:7
相关论文
共 50 条
  • [1] Interactive modeling of supramolecular assemblies
    Macke, TJ
    Duncan, BS
    Goodsell, DS
    Olson, AJ
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1998, 16 (03): : 115 - +
  • [2] Conformational dynamics of supramolecular protein assemblies
    Kim, Do-Nyun
    Nguyen, Cong-Tri
    Bathe, Mark
    JOURNAL OF STRUCTURAL BIOLOGY, 2011, 173 (02) : 261 - 270
  • [3] Dynamics and Rheology of Supramolecular Assemblies at Elevated Pressures
    Burger, Nikolaos A.
    Meier, Gerhard
    Bouteiller, Laurent
    Loppinet, Benoit
    Vlassopoulos, Dimitris
    JOURNAL OF PHYSICAL CHEMISTRY B, 2022, 126 (35): : 6713 - 6724
  • [4] Solvation dynamics and proton transfer in supramolecular assemblies
    Bhattacharyya, K
    ACCOUNTS OF CHEMICAL RESEARCH, 2003, 36 (02) : 95 - 101
  • [5] Dynamics of supramolecular assemblies in solution and solid state
    Chen, ZG
    Mercier, L
    Tunney, JJ
    Detellier, C
    PHYSICAL SUPRAMOLECULAR CHEMISTRY, 1996, 485 : 393 - 411
  • [6] Tips and Tricks in the Modeling of Supramolecular Peptide Assemblies
    Piskorz, Tomasz K.
    Perez-Chirinos, Laura
    Qiao, Baofu
    Sasselli, Ivan R.
    ACS OMEGA, 2024, 9 (29): : 31254 - 31273
  • [7] Surface Accessibility and Dynamics of Macromolecular Assemblies Probed by Covalent Labeling Mass Spectrometry and Integrative Modeling
    Schmidt, Carla
    Macpherson, Jamie A.
    Lau, Andy M.
    Tan, Ken Wei
    Fraternali, Franca
    Politis, Argyris
    ANALYTICAL CHEMISTRY, 2017, 89 (03) : 1459 - 1468
  • [8] Dynamics Simulations of Supramolecular and Polymeric Self-assemblies
    Zhu, You-liang
    Lu, Zhong-yuan
    ACTA POLYMERICA SINICA, 2021, 52 (08): : 884 - 897
  • [9] Integrative modeling of membrane-associated protein assemblies
    Roel-Touris, Jorge
    Jimenez-Garcia, Brian
    Bonvin, Alexandre M. J. J.
    NATURE COMMUNICATIONS, 2020, 11 (01)
  • [10] Integrative modeling of membrane-associated protein assemblies
    Jorge Roel-Touris
    Brian Jiménez-García
    Alexandre M. J. J. Bonvin
    Nature Communications, 11