The International Nucleotide Sequence Database Collaboration

被引：128

作者：

Cochrane, Guy ^{[1
]}

Karsch-Mizrachi, Ilene ^{[2
]}

Takagi, Toshihisa ^{[3
]}

机构：

[1] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England

[2] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA

[3] Natl Inst Genet, DDBJ Ctr, Mishima, Shizuoka 411, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2016年 / 44卷 / D1期

基金：

英国惠康基金;

关键词：

D O I：

10.1093/nar/gkv1323

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The International Nucleotide Sequence Database Collaboration (INSDC;http://www.insdc.org) comprises three global partners committed to capturing, preserving and providing comprehensive publicdomain nucleotide sequence information. The INSDC establishes standards, formats and protocols for data and metadata to make it easier for individuals and organisations to submit their nucleotide data reliably to public archives. This work enables the continuous, global exchange of information about living things. Here we present an update of the INSDC in 2015, including data growth and diversification, new standards and requirements by publishers for authors to submit their data to the public archives. The INSDC serves as a model for data sharing in the life sciences.

引用

页码：D48 / D50

页数：3

共 5 条

[1] Efficient storage of high throughput DNA sequencing data using reference-based compression [J].

Fritz, Markus Hsi-Yang ;

Leinonen, Rasko ;

Cochrane, Guy ;

Birney, Ewan .

GENOME RESEARCH, 2011, 21 (05) :734-740

[2] The Sequence Read Archive [J].

Leinonen, Rasko ;

Sugawara, Hideaki ;

Shumway, Martin .

NUCLEIC ACIDS RESEARCH, 2011, 39 :D19-D21

[3] The International Nucleotide Sequence Database Collaboration [J].

Nakamura, Yasukazu ;

Cochrane, Guy ;

Karsch-Mizrachi, Ilene .

NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D21-D24

[4] The genomic standards consortium: bringing standards to life for microbial ecology [J].

Yilmaz, Pelin ;

Gilbert, Jack A. ;

Knight, Rob ;

Amaral-Zettler, Linda ;

Karsch-Mizrachi, Ilene ;

Cochrane, Guy ;

Nakamura, Yasukazu ;

Sansone, Susanna-Assunta ;

Gloeckner, Frank Oliver ;

Field, Dawn .

ISME JOURNAL, 2011, 5 (10) :1565-1567

[5] Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications [J].

Yilmaz, Pelin ;

Kottmann, Renzo ;

Field, Dawn ;

Knight, Rob ;

Cole, James R. ;

Amaral-Zettler, Linda ;

Gilbert, Jack A. ;

Karsch-Mizrachi, Ilene ;

Johnston, Anjanette ;

Cochrane, Guy ;

Vaughan, Robert ;

Hunter, Christopher ;

Park, Joonhong ;

Morrison, Norman ;

Rocca-Serra, Philippe ;

Sterk, Peter ;

Arumugam, Manimozhiyan ;

Bailey, Mark ;

Baumgartner, Laura ;

Birren, Bruce W. ;

Blaser, Martin J. ;

Bonazzi, Vivien ;

Booth, Tim ;

Bork, Peer ;

Bushman, Frederic D. ;

Buttigieg, Pier Luigi ;

Chain, Patrick S. G. ;

Charlson, Emily ;

Costello, Elizabeth K. ;

Huot-Creasy, Heather ;

Dawyndt, Peter ;

DeSantis, Todd ;

Fierer, Noah ;

Fuhrman, Jed A. ;

Gallery, Rachel E. ;

Gevers, Dirk ;

Gibbs, Richard A. ;

Gil, Inigo San ;

Gonzalez, Antonio ;

Gordon, Jeffrey I. ;

Guralnick, Robert ;

Hankeln, Wolfgang ;

Highlander, Sarah ;

Hugenholtz, Philip ;

Jansson, Janet ;

Kau, Andrew L. ;

Kelley, Scott T. ;

Kennedy, Jerry ;

Knights, Dan ;

Koren, Omry .

NATURE BIOTECHNOLOGY, 2011, 29 (05) :415-420

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