Back to the future: evolution of computational models in plant morphogenesis

被引:27
作者
Grieneisen, Veronica A. [2 ]
Scheres, Ben [1 ]
机构
[1] Univ Utrecht, Mol Genet Grp, Utrecht, Netherlands
[2] Univ Utrecht, Theoret Biol & Bioinformat Grp, Utrecht, Netherlands
关键词
POLAR AUXIN TRANSPORT; SHOOT APICAL MERISTEM; ROOT HAIR DEVELOPMENT; PATTERN-FORMATION; ARABIDOPSIS-THALIANA; DICTYOSTELIUM-DISCOIDEUM; POSITIONAL INFORMATION; CELLULAR INTERACTIONS; COMPUTER-SIMULATIONS; MATHEMATICAL MODELS;
D O I
10.1016/j.pbi.2009.07.008
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
There has been a recent surge of studies in plant biology that combine experimental data with computational modeling. Here, we categorize a diversity of theoretical models and emphasize the need to tailor modeling approaches to the questions at hand. Models can start from biophysical or purely heuristic basic principles, and can focus at several levels of biological organization. Recent examples illustrate that this entire spectrum can be useful to understand plant development, and point to a future direction where more approaches are combined in fruitful ways - either by proving the same result with different basic principles or by exploring interactions across levels, in the so-called multilevel models.
引用
收藏
页码:606 / 614
页数:9
相关论文
共 107 条
[1]   Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism [J].
Abas, L ;
Benjamins, R ;
Malenica, N ;
Paciorek, T ;
Wirniewska, J ;
Moulinier-Anzola, JC ;
Sieberer, T ;
Friml, J ;
Luschnig, C .
NATURE CELL BIOLOGY, 2006, 8 (03) :249-256
[2]   Phenotypic evolution is restrained by complex developmental processes [J].
Alvarez-Buylla, E. R. ;
Benitez, M. ;
Espinosa-Soto, C. .
HFSP JOURNAL, 2007, 1 (02) :99-103
[3]  
Anderson ARA, 2007, SINGLE CELL BASED MO
[4]   Plant architecture:: A dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny [J].
Barthelemy, Daniel ;
Caraglio, Yves .
ANNALS OF BOTANY, 2007, 99 (03) :375-407
[5]   Integration of transport-based models for phyllotaxis and midvein formation [J].
Bayer, Emmanuelle M. ;
Smith, Richard S. ;
Mandel, Therese ;
Nakayama, Naomi ;
Sauer, Michael ;
Prusinkiewicz, Przemyslaw ;
Kuhlemeier, Cris .
GENES & DEVELOPMENT, 2009, 23 (03) :373-384
[6]   Network building: transcriptional circuits in the root [J].
Birnbaum, K ;
Benfey, PN .
CURRENT OPINION IN PLANT BIOLOGY, 2004, 7 (05) :582-588
[7]   Growth of walled cells: From shells to vesicles [J].
Boudaoud, A .
PHYSICAL REVIEW LETTERS, 2003, 91 (01)
[8]   Building a hair:: tip growth in Arabidopsis thaliana root hairs [J].
Carol, RJ ;
Dolan, L .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 2002, 357 (1422) :815-821
[9]   A cellular growth model for root tips [J].
Chavarría-Krauser, A ;
Schurr, U .
JOURNAL OF THEORETICAL BIOLOGY, 2004, 230 (01) :21-32
[10]   The growing world of expansins [J].
Cosgrove, DJ ;
Li, LC ;
Cho, HT ;
Hoffmann-Benning, S ;
Moore, RC ;
Blecker, D .
PLANT AND CELL PHYSIOLOGY, 2002, 43 (12) :1436-1444