Attribute selection based on information gain ratio in fuzzy rough set theory with application to tumor classification

被引:304
作者
Dai, Jianhua [1 ]
Xu, Qing [1 ]
机构
[1] Zhejiang Univ, Coll Comp Sci, Hangzhou 310027, Zhejiang, Peoples R China
基金
中国国家自然科学基金;
关键词
Attribute selection; Mutual information; Fuzzy rough sets; Gain ratio; Tumor classification; RELATIONAL DATABASES; REDUCTION; SYSTEMS; APPROXIMATION; PREDICTION; FEATURES; ENTROPY;
D O I
10.1016/j.asoc.2012.07.029
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Tumor classification based on gene expression levels is important for tumor diagnosis. Since tumor data in gene expression contain thousands of attributes, attribute selection for tumor data in gene expression becomes a key point for tumor classification. Inspired by the concept of gain ratio in decision tree theory, an attribute selection method based on fuzzy gain ratio under the framework of fuzzy rough set theory is proposed. The approach is compared to several other approaches on three real world tumor data sets in gene expression. Results show that the proposed method is effective. This work may supply an optional strategy for dealing with tumor data in gene expression or other applications. (C) 2012 Elsevier B. V. All rights reserved.
引用
收藏
页码:211 / 221
页数:11
相关论文
共 60 条
[1]   Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays [J].
Alon, U ;
Barkai, N ;
Notterman, DA ;
Gish, K ;
Ybarra, S ;
Mack, D ;
Levine, AJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (12) :6745-6750
[2]  
[Anonymous], P 2 AUSTR C APPL EXP
[3]   USING MUTUAL INFORMATION FOR SELECTING FEATURES IN SUPERVISED NEURAL-NET LEARNING [J].
BATTITI, R .
IEEE TRANSACTIONS ON NEURAL NETWORKS, 1994, 5 (04) :537-550
[4]   On fuzzy-rough sets approach to feature selection [J].
Bhatt, RB ;
Gopal, M .
PATTERN RECOGNITION LETTERS, 2005, 26 (07) :965-975
[5]   Rough set analysis on call center metrics [J].
Chen, Rong-Rong ;
Chiang, Yen-I ;
Chong, P. Pete ;
Lin, Yung-Hsiu ;
Chang, Her-Kun .
APPLIED SOFT COMPUTING, 2011, 11 (04) :3804-3811
[6]   A soft-computing based rough sets classifier for classifying IPO returns in the financial markets [J].
Chen, You-Shyang ;
Cheng, Ching-Hsue .
APPLIED SOFT COMPUTING, 2012, 12 (01) :462-475
[7]  
Cheng J., 1988, Machine Learning Proceedings 1988, Elsevier, P100, DOI [10.1016/B978-0-934613-64-4.50016-5, DOI 10.1016/B978-0-934613-64-4.50016-5]
[8]  
Dai JH, 2002, 2002 INTERNATIONAL CONFERENCE ON MACHINE LEARNING AND CYBERNETICS, VOLS 1-4, PROCEEDINGS, P833
[9]   Rough 3-valued algebras [J].
Dai, Jian-Hua .
INFORMATION SCIENCES, 2008, 178 (08) :1986-1996
[10]  
Dai Jian-hua, 2002, Wuhan University Journal of Natural Sciences, V7, P285, DOI 10.1007/BF02912142