Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

被引：11

作者：

Bertone, Matthew A. ^{[1
]}

Miko, Istvan ^{[1
,2
]}

Yoder, Matthew J. ^{[1
,3
]}

Seltmann, Katja C. ^{[1
,4
]}

Balhoff, James P. ^{[5
,6
]}

Deans, Andrew R. ^{[1
,2
]}

机构：

[1] N Carolina State Univ, Dept Entomol, Raleigh, NC 27695 USA

[2] Penn State Univ, Dept Entomol, University Pk, PA 16802 USA

[3] Illinois Nat Hist Survey, Champaign, IL 61820 USA

[4] Amer Museum Nat Hist, Dept Invertebrate Zool, New York, NY 10024 USA

[5] Natl Evolutionary Synth Ctr, Durham, NC 27705 USA

[6] Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2013年

基金：

美国国家科学基金会;

关键词：

D O I：

10.1093/database/bas057

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group's anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process. Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.obo

引用

页数：9

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