Use of differential scanning fluorimetry to optimize the purification and crystallization of PLP-dependent enzymes

被引:18
作者
Geders, Todd W. [1 ]
Gustafson, Kathryn [1 ]
Finzel, Barry C. [1 ]
机构
[1] Univ Minnesota, Dept Med Chem, Minneapolis, MN 55455 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2012年 / 68卷
关键词
THERMAL SHIFT ASSAYS; BIOTIN BIOSYNTHESIS; MYCOBACTERIUM-TUBERCULOSIS; PROTEIN STABILITY; DRUG DISCOVERY; BIOA;
D O I
10.1107/S1744309112012912
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Differential scanning fluorimetry (DSF) is a practical and accessible technique that allows the assessment of multiphasic unfolding behavior resulting from subsaturating binding of ligands. Multiphasic unfolding is indicative of a heterogenous protein solution, which frequently interferes with crystallization and complicates functional characterization of proteins of interest. Along with UV-Vis spectroscopy, DSF was used to guide purification and crystallization improvements for the pyridoxal 50-phosphate (PLP) dependent transaminase BioA from Mycobacterium tuberculosis. The incompatibility of the primary amine-containing buffer 2-amino-2-(hydroxymethyl)-1,3-propanediol (Tris) and PLP was identified as a significant contributor to heterogeneity. It is likely that the utility of DSF for ligand-binding assessment is not limited to the cofactor PLP but will be applicable to a variety of ligand-dependent enzymes.
引用
收藏
页码:596 / 600
页数:5
相关论文
共 24 条
[1]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[2]  
BUZARD JA, 1959, J BIOL CHEM, V234, P884
[3]   A quantitative model of thermal stabilization and destabilization of proteins by ligands [J].
Cimmperman, Piotras ;
Baranauskiene, Lina ;
Jachimoviciute, Simona ;
Jachno, Jelena ;
Torresan, Jolanta ;
Michailoviene, Vilma ;
Matuliene, Jurgita ;
Sereikaite, Jolanta ;
Bumelis, Vladas ;
Matulis, Daumantas .
BIOPHYSICAL JOURNAL, 2008, 95 (07) :3222-3231
[4]   Structural Characterization of the Mycobacterium tuberculosis Biotin Biosynthesis Enzymes 7,8-Diaminopelargonic Acid Synthase and Dethiobiotin Synthetase [J].
Dey, Sanghamitra ;
Lane, James M. ;
Lee, Richard E. ;
Rubin, Eric J. ;
Sacchettini, James C. .
BIOCHEMISTRY, 2010, 49 (31) :6746-6760
[5]   A thermal stability assay can help to estimate the crystallization likelihood of biological samples [J].
Dupeux, Florine ;
Roewer, Martin ;
Seroul, Gael ;
Blot, Delphine ;
Marquez, Jose A. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2011, 67 :915-919
[6]   Features and development of Coot [J].
Emsley, P. ;
Lohkamp, B. ;
Scott, W. G. ;
Cowtan, K. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 :486-501
[7]   Thermofluor-based high-throughput stability optimization of proteins for structural studies [J].
Ericsson, Ulrika B. ;
Hallberg, B. Martin ;
DeTitta, George T. ;
Dekker, Niek ;
Nordlund, Par .
ANALYTICAL BIOCHEMISTRY, 2006, 357 (02) :289-298
[8]   Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells [J].
Grasberger, BL ;
Lu, TB ;
Schubert, C ;
Parks, DJ ;
Carver, TE ;
Koblish, HK ;
Cummings, MD ;
LaFrance, LV ;
Milkiewicz, KL ;
Calvo, RR ;
Maguire, D ;
Lattanze, J ;
Franks, CF ;
Zhao, SY ;
Ramachandren, K ;
Bylebyl, GR ;
Zhang, M ;
Manthey, CL ;
Petrella, EC ;
Pantoliano, MW ;
Deckman, IC ;
Spurlino, JC ;
Maroney, AC ;
Tomczuk, BE ;
Molloy, CJ ;
Bone, RF .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (04) :909-912
[9]   PROTEIN THERMAL SHIFTS TO IDENTIFY LOW MOLECULAR WEIGHT FRAGMENTS [J].
Kranz, James K. ;
Schalk-Hihi, Celine .
FRAGMENT-BASED DRUG DESIGN: TOOLS, PRACTICAL APPROACHES, AND EXAMPLES, 2011, 493 :277-298
[10]   Thermodynamic Analysis of Ligand-Induced Changes in Protein Thermal Unfolding Applied to High-Throughput Determination of Ligand Affinities with Extrinsic Fluorescent Dyes [J].
Layton, Curtis J. ;
Hellinga, Homme W. .
BIOCHEMISTRY, 2010, 49 (51) :10831-10841