Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

被引：23

作者：

Clum, Alicia ^{[1
]}

Tindall, Brian J. ^{[2
]}

Sikorski, Johannes ^{[2
]}

Ivanova, Natalia ^{[1
]}

Mavrommatis, Konstantinos ^{[1
]}

Lucas, Susan ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Nolan, Matt ^{[1
]}

Chen, Feng ^{[1
]}

Tice, Hope ^{[1
]}

Pitluck, Sam ^{[1
]}

Cheng, Jan-Fang ^{[1
]}

Chertkov, Olga ^{[1
,3
]}

Brettin, Thomas ^{[1
,3
]}

Han, Cliff ^{[1
,3
]}

Detter, John C. ^{[1
,3
]}

Kuske, Cheryl ^{[1
,3
]}

Bruce, David ^{[1
,3
]}

Goodwin, Lynne ^{[1
,3
]}

Ovchinikova, Galina ^{[1
]}

Pati, Amrita ^{[1
]}

Mikhailova, Natalia ^{[1
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[1
,5
]}

Hauser, Loren ^{[1
,5
]}

Chang, Yun-Juan ^{[1
,5
]}

Jeffries, Cynthia D. ^{[1
,5
]}

Chain, Patrick ^{[1
,3
]}

Rohde, Manfred ^{[6
]}

Goeker, Markus ^{[2
]}

Bristow, Jim ^{[1
]}

Eisen, Jonathan A. ^{[1
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

Klenk, Hans-Peter ^{[2
]}

Lapidus, Alla ^{[1
]}

机构：

[1] US DOE, Joint Genome Inst, Walnut Creek, CA USA

[2] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[3] Los Alamos Natl Lab, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2009年 / 1卷 / 03期

关键词：

non-prosthecate budding bacteria; developmental life cycle; Gram-negative; mesophile; Planctomycetaceae; 'Planctomycetes'; GEBA; PHYLOGENETIC DIVERSITY; BUDDING BACTERIA; NOV; PLANCTOMYCES; ASSIGNMENT; ATCC-27377; PROPOSAL; REQUEST; MEMBERS; SYSTEM;

D O I：

10.4056/sigs.51657

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pirellula staleyi Schlesner and Hirsch 1987 is the type species of the genus Pirellula of the family Planctomycetaceae. Members of this pear-or teardrop-shaped bacterium show a clearly visible pointed attachment pole and can be distinguished from other Planctomycetes by a lack of true stalks. Strains closely related to the species have been isolated from fresh and brackish water, as well as from hypersaline lakes. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the order Planctomyces and only the second sequence from the phylum Planctomycetes. The 6,196,199 bp long genome with its 4773 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：308 / 316

页数：9

共 36 条

[1]

[Anonymous], INT J SYST BACTERIOL

[2] Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[3]

BAINIER G, 1883, ANN SCI NAT BOT 6, V15, P70

[4] Molecular and ultrastructural confirmation of classification of ATCC 35122 as a strain of Pirellula staleyi [J].

Butler, MK ;

Wang, J ;

Webb, RI ;

Fuerst, JA .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2002, 52 :1663-1667

[5] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis [J].

Castresana, J .

MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) :540-552

[6] PHYLOGENETIC DIVERSITY OF AGGREGATE-ATTACHED VS FREE-LIVING MARINE BACTERIAL ASSEMBLAGES [J].

DELONG, EF ;

FRANKS, DG ;

ALLDREDGE, AL .

LIMNOLOGY AND OCEANOGRAPHY, 1993, 38 (05) :924-934

[7] Nomenclatural type of orders:: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses.: Request for an Opinion [J].

Euzéby, JP ;

Tindall, BJ .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :725-727

[8] The minimum information about a genome sequence (MIGS) specification [J].

Field, Dawn ;

Garrity, George ;

Gray, Tanya ;

Morrison, Norman ;

Selengut, Jeremy ;

Sterk, Peter ;

Tatusova, Tatiana ;

Thomson, Nicholas ;

Allen, Michael J. ;

Angiuoli, Samuel V. ;

Ashburner, Michael ;

Axelrod, Nelson ;

Baldauf, Sandra ;

Ballard, Stuart ;

Boore, Jeffrey ;

Cochrane, Guy ;

Cole, James ;

Dawyndt, Peter ;

De Vos, Paul ;

dePamphilis, Claude ;

Edwards, Robert ;

Faruque, Nadeem ;

Feldman, Robert ;

Gilbert, Jack ;

Gilna, Paul ;

Gloeckner, Frank Oliver ;

Goldstein, Philip ;

Guralnick, Robert ;

Haft, Dan ;

Hancock, David ;

Hermjakob, Henning ;

Hertz-Fowler, Christiane ;

Hugenholtz, Phil ;

Joint, Ian ;

Kagan, Leonid ;

Kane, Matthew ;

Kennedy, Jessie ;

Kowalchuk, George ;

Kottmann, Renzo ;

Kolker, Eugene ;

Kravitz, Saul ;

Kyrpides, Nikos ;

Leebens-Mack, Jim ;

Lewis, Suzanna E. ;

Li, Kelvin ;

Lister, Allyson L. ;

Lord, Phillip ;

Maltsev, Natalia ;

Markowitz, Victor ;

Martiny, Jennifer .

NATURE BIOTECHNOLOGY, 2008, 26 (05) :541-547

[9]

Garrity G.M., 2001, BERGEYS MAN SYST BAC, V2nd, P119, DOI [10.1007/978-0-387-21609-6_15, DOI 10.1007/978-0-387-21609-6_15]

[10] Phylogenetic analysis of the bacterial communities in marine sediments [J].

Gray, JP ;

Herwig, RP .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1996, 62 (11) :4049-4059

← 1 2 3 4 →