Generation of Aptamers with an Expanded Chemical Repertoire

被引:85
作者
Diafa, Stella [1 ]
Hollenstein, Marcel [1 ]
机构
[1] Univ Bern, Dept Chem & Biochem, CH-3012 Bern, Switzerland
基金
瑞士国家科学基金会;
关键词
aptamers; modified nucleoside triphosphates; polymerases; SELEX; therapeutic oligonucleotides; chemically modified nucleic acids; synthetic genetic polymers; IN-VITRO SELECTION; IMMUNODEFICIENCY-VIRUS TYPE-1; MODIFIED DNA APTAMERS; HIGH-AFFINITY; RNA APTAMERS; DEOXYNUCLEOSIDE TRIPHOSPHATES; COMBINATORIAL SELECTION; DIRECTED EVOLUTION; NUCLEIC-ACIDS; POLYMERASE INCORPORATION;
D O I
10.3390/molecules200916643
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The enzymatic co-polymerization of modified nucleoside triphosphates (dN*TPs and N*TPs) is a versatile method for the expansion and exploration of expanded chemical space in SELEX and related combinatorial methods of in vitro selection. This strategy can be exploited to generate aptamers with improved or hitherto unknown properties. In this review, we discuss the nature of the functionalities appended to nucleoside triphosphates and their impact on selection experiments. The properties of the resulting modified aptamers will be described, particularly those integrated in the fields of biomolecular diagnostics, therapeutics, and in the expansion of genetic systems (XNAs).
引用
收藏
页码:16643 / 16671
页数:29
相关论文
共 174 条
  • [61] Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands
    Jensen, KB
    Atkinson, BL
    Willis, MC
    Koch, TH
    Gold, L
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (26) : 12220 - 12224
  • [62] Locked nucleic acid: A potent nucleic acid analog in therapeutics and biotechnology
    Jepsen, JS
    Sorensen, MD
    Wengel, J
    [J]. OLIGONUCLEOTIDES, 2004, 14 (02) : 130 - 146
  • [63] Forty years of in vitro evolution
    Joyce, Gerald F.
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (34) : 6420 - 6436
  • [64] 2′,4′-BNA/LNA aptamers: CE-SELEX using a DNA-based library of full-length 2′-O,4′-C-methylene-bridged/linked bicyclic ribonucleotides
    Kasahara, Yuuya
    Irisawa, Yuuta
    Ozaki, Hiroaki
    Obika, Satoshi
    Kuwahara, Masayasu
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2013, 23 (05) : 1288 - 1292
  • [65] New NTP analogs:: the synthesis of 4′-thioUTP and 4′-thioCTP and their utility for SELEX
    Kato, Y
    Minakawa, N
    Komatsu, Y
    Kamiya, H
    Ogawa, N
    Harashima, H
    Matsuda, A
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 (09) : 2942 - 2951
  • [66] SELEX with modified nucleotides
    Keefe, Anthony D.
    Cload, Sharon T.
    [J]. CURRENT OPINION IN CHEMICAL BIOLOGY, 2008, 12 (04) : 448 - 456
  • [67] Aptamers as therapeutics
    Keefe, Anthony D.
    Pai, Supriya
    Ellington, Andrew
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2010, 9 (07) : 537 - 550
  • [68] Neutralization of infectivity of diverse R5 clinical isolates of human immunodeficiency virus type 1 by gp120-binding 2′F-RNA aptamers
    Khati, M
    Schüman, M
    Ibrahim, J
    Sattentau, Q
    Gordon, S
    James, W
    [J]. JOURNAL OF VIROLOGY, 2003, 77 (23) : 12692 - 12698
  • [69] Generation of high-affinity DNA aptamers using an expanded genetic alphabet
    Kimoto, Michiko
    Yamashige, Rie
    Matsunaga, Ken-ichiro
    Yokoyama, Shigeyuki
    Hirao, Ichiro
    [J]. NATURE BIOTECHNOLOGY, 2013, 31 (05) : 453 - +
  • [70] Combinatorial selection and binding of phosphorothioate aptamers targeting human NF-κB RelA(p65) and p50
    King, DJ
    Bassett, SE
    Li, X
    Fennewald, SA
    Herzog, NK
    Luxon, BA
    Shope, R
    Gorenstein, DG
    [J]. BIOCHEMISTRY, 2002, 41 (30) : 9696 - 9706