PaR-PaR Laboratory Automation Platform

被引:41
|
作者
Linshiz, Gregory [1 ,2 ]
Stawski, Nina [1 ,2 ]
Poust, Sean [3 ]
Bi, Changhao [2 ]
Keasling, Jay D. [1 ,2 ]
Hilson, Nathan J. [1 ,2 ,4 ]
机构
[1] Joint BioEnergy Inst, Fuels Synth Div, Emeryville, CA 94608 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Dept Chem & Biomol Engn, Dept Bioengn, Berkeley, CA 94720 USA
[4] DOE Joint Genome Inst, Walnut Creek, CA 94598 USA
来源
ACS SYNTHETIC BIOLOGY | 2013年 / 2卷 / 05期
基金
美国国家科学基金会;
关键词
synthetic biology; design automation; liquid-handling robotics; laboratory automation; high-level programming language; DESIGN; EXPRESSION; SOFTWARE;
D O I
10.1021/sb300075t
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Labor-intensive multistep biological tasks, such as the construction and cloning of DNA molecules, are prime candidates for laboratory automation. Flexible and biology-friendly operation of robotic equipment is key to its successful integration in biological laboratories, and the efforts required to operate a robot must be much smaller than the alternative manual lab work. To achieve these goals, a simple high-level biology-friendly robot programming language is needed. We have developed and experimentally validated such a language: Programming a Robot (PaR-PaR). The syntax and compiler for the language are based on computer science principles and a deep understanding of biological workflows. PaR-PaR allows researchers to use liquid-handling robots effectively, enabling experiments that would not have been considered previously. After minimal training, a biologist can independently write complicated protocols for a robot within an hour. Adoption of PaR-PaR as a standard cross-platform language would enable hand-written or software-generated robotic protocols to be shared across laboratories.
引用
收藏
页码:216 / 222
页数:7
相关论文
共 50 条
  • [41] Regional developers' community accelerates laboratory automation
    Kato, Akari
    Horinouchi, Takaaki
    Ozaki, Haruka
    Kanda, Genki N.
    SLAS TECHNOLOGY, 2024, 29 (06):
  • [42] FragMAX: the fragment-screening platform at the MAX IV Laboratory
    Lima, Gustavo M. A.
    Talibov, Vladimir O.
    Jagudin, Elmir
    Sele, Celeste
    Nyblom, Maria
    Knecht, Wolfgang
    Logan, Derek T.
    Sjogren, Tove
    Mueller, Uwe
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2020, 76 : 771 - 777
  • [43] PAR1-and PAR2-induced innate immune markers are negatively regulated by PI3K/Akt signaling pathway in oral keratinocytes
    Rohani, Maryam G.
    DiJulio, Dennis H.
    An, Jonathan Y.
    Hacker, Beth M.
    Dale, Beverly A.
    Chung, Whasun O.
    BMC IMMUNOLOGY, 2010, 11 : 53
  • [44] Proteinase-activated receptor-2 (PAR2) and mouse osteoblasts: Regulation of cell function and lack of specificity of PAR2-activating peptides
    Georgy, Smitha R.
    Pagel, Charles N.
    Wong, David M.
    Sivagurunathan, Sutharshani
    Loh, Lay H.
    Myers, Damian E.
    Hollenberg, Morley D.
    Pike, Robert N.
    Mackie, Eleanor J.
    CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY, 2010, 37 (03) : 328 - 336
  • [45] PAR2 Modulators Derived from GB88
    Yau, Mei-Kwan
    Liu, Ligong
    Suen, Jacky Y.
    Lim, Junxian
    Lohman, Rink-Jan
    Jiang, Yuhong
    Cotterell, Adam J.
    Barry, Grant D.
    Mak, Jeffrey Y. W.
    Vesey, David A.
    Reid, Robert C.
    Fairlie, David P.
    ACS MEDICINAL CHEMISTRY LETTERS, 2016, 7 (12): : 1179 - 1184
  • [46] Downregulation of adipose LPL by PAR2 contributes to the development of hypertriglyceridemia
    Huang, Yiheng
    Chen, Liujun
    Li, Lisha
    Qi, Yadan
    Tong, Haibin
    Wu, Hong
    Xu, Jinjie
    Leng, Lin
    Cheema, Sukhinder
    Sun, Guang
    Xia, Zhengyuan
    McGuire, John
    Rodrigues, Brian
    Young, Lawrence H.
    Bucala, Richard
    Qi, Dake
    JCI INSIGHT, 2024, 9 (13)
  • [47] Accelerated strain construction and characterization of C. glutamicum protein secretion by laboratory automation
    Mueller, Carolin
    Bakkes, Patrick J.
    Lenz, Patrick
    Waffenschmidt, Vera
    Helleckes, Laura M.
    Jaeger, Karl-Erich
    Wiechert, Wolfgang
    Knapp, Andreas
    Freudl, Roland
    Oldiges, Marco
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2022, 106 (12) : 4481 - 4497
  • [48] Punicalagin Ameliorates Lupus Nephritis via Inhibition of PAR2
    Seo, Yohan
    Mun, Chin Hee
    Park, So-Hyeon
    Jeon, Dongkyu
    Kim, Su Jeong
    Yoon, Taejun
    Ko, Eunhee
    Jo, Sungwoo
    Park, Yong-Beom
    Namkung, Wan
    Lee, Sang-Won
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (14) : 1 - 17
  • [49] PAR-1 and Thrombin: The Ties That Bind the Microenvironment to Melanoma Metastasis
    Zigler, Maya
    Kamiya, Takafumi
    Brantley, Emily C.
    Villares, Gabriel J.
    Bar-Eli, Menashe
    CANCER RESEARCH, 2011, 71 (21) : 6561 - 6566
  • [50] PAR-2 Regulates Dental Pulp Inflammation Associated with Caries
    Lundy, F. T.
    About, I.
    Curtis, T. M.
    McGahon, M. K.
    Linden, G. J.
    Irwin, C. R.
    El Karim, I. A.
    JOURNAL OF DENTAL RESEARCH, 2010, 89 (07) : 684 - 688