PaR-PaR Laboratory Automation Platform

被引:41
|
作者
Linshiz, Gregory [1 ,2 ]
Stawski, Nina [1 ,2 ]
Poust, Sean [3 ]
Bi, Changhao [2 ]
Keasling, Jay D. [1 ,2 ]
Hilson, Nathan J. [1 ,2 ,4 ]
机构
[1] Joint BioEnergy Inst, Fuels Synth Div, Emeryville, CA 94608 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Dept Chem & Biomol Engn, Dept Bioengn, Berkeley, CA 94720 USA
[4] DOE Joint Genome Inst, Walnut Creek, CA 94598 USA
来源
ACS SYNTHETIC BIOLOGY | 2013年 / 2卷 / 05期
基金
美国国家科学基金会;
关键词
synthetic biology; design automation; liquid-handling robotics; laboratory automation; high-level programming language; DESIGN; EXPRESSION; SOFTWARE;
D O I
10.1021/sb300075t
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Labor-intensive multistep biological tasks, such as the construction and cloning of DNA molecules, are prime candidates for laboratory automation. Flexible and biology-friendly operation of robotic equipment is key to its successful integration in biological laboratories, and the efforts required to operate a robot must be much smaller than the alternative manual lab work. To achieve these goals, a simple high-level biology-friendly robot programming language is needed. We have developed and experimentally validated such a language: Programming a Robot (PaR-PaR). The syntax and compiler for the language are based on computer science principles and a deep understanding of biological workflows. PaR-PaR allows researchers to use liquid-handling robots effectively, enabling experiments that would not have been considered previously. After minimal training, a biologist can independently write complicated protocols for a robot within an hour. Adoption of PaR-PaR as a standard cross-platform language would enable hand-written or software-generated robotic protocols to be shared across laboratories.
引用
收藏
页码:216 / 222
页数:7
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