Fungal diversity and distribution across distinct biodeterioration phenomena in limestone walls of the old cathedral of Coimbra, UNESCO World Heritage Site

被引:56
作者
Trovao, Joao [1 ]
Portugal, Antonio [1 ]
Soares, Fabiana [1 ]
Paiva, Diana Sofia [2 ]
Mesquita, Nuno [1 ]
Coelho, Catarina [1 ]
Pinheiro, Ana Catarina [1 ]
Catarino, Lidia [3 ]
Gil, Francisco [4 ]
Tiago, Igor [1 ]
机构
[1] Univ Coimbra, Life Sci Dept, Ctr Funct Ecol Sci People & Planet, Coimbra, Portugal
[2] Inst Pedro Nunes, Lab Plant Hlth, Fitolab, Coimbra, Portugal
[3] Univ Coimbra, Earth Sci Dept, Geosci Ctr, Coimbra, Portugal
[4] Univ Coimbra, CFisUC Ctr Phys, Coimbra, Portugal
关键词
Limestone; Biodeterioration; Fungi; Next-generation-sequencing; Cultivation-dependent methodologies; CULTURAL-HERITAGE; BACTERIAL DIVERSITY; BLACK FUNGI; MICROBIAL DETERIORATION; IDENTIFICATION; BIODIVERSITY; COMMUNITIES; DATABASE; RESISTANCE; MONUMENTS;
D O I
10.1016/j.ibiod.2019.05.008
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Fungi are powerful biodeteriogens and when colonizing stone monuments are often responsible for severe physical, chemical and aesthetical modifications. Recently the old cathedral of Coimbra (Portugal) was awarded the UNESCO World Heritage Site distinction as an integrant part of the "University of Coimbra- Alta and Sofia" area. The limestone walls in this cathedral show clear visual signs of biological colonization and biodeterioration. The aim of this work was to obtain an extensive fingerprint of the biodeteriorating fungal agents in this affected ancient limestone through the application of traditional cultivation and modern Next Generation Sequencing techniques. Due to high diversity of distinctive biodeterioration phenomena affecting this site, a rapport between the identified fungal populations and the different biodeterioration types found was also established and their importance for the monument preservation discussed. The results obtained through the application of this approach, not only allowed a robust characterization of the fungal communities colonizing this monument, but also elucidated that distinct fungal communities are dissimilar according to the type of biodeterioration analyzed. In addition, we verified that both cultivation and metagenomics methodologies should be employed synergistically in limestone biodeterioration studies in order to tackle inherent limitations regarding both techniques.
引用
收藏
页码:91 / 102
页数:12
相关论文
共 92 条
[31]   Fungi, Rocks, and Minerals [J].
Gadd, Geoffrey M. .
ELEMENTS, 2017, 13 (03) :171-176
[32]   Geomicrobiology of the built environment [J].
Gadd, Geoffrey Michael .
NATURE MICROBIOLOGY, 2017, 2 (04)
[33]   Marine Isolates of Trichoderma spp. as Potential Halotolerant Agents of Biological Control for Arid-Zone Agriculture [J].
Gal-Hemed, Inbal ;
Atanasova, Lea ;
Komon-Zelazowska, Monika ;
Druzhinina, Irina S. ;
Viterbo, Ada ;
Yarden, Oded .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (15) :5100-5109
[34]   ITS PRIMERS WITH ENHANCED SPECIFICITY FOR BASIDIOMYCETES - APPLICATION TO THE IDENTIFICATION OF MYCORRHIZAE AND RUSTS [J].
GARDES, M ;
BRUNS, TD .
MOLECULAR ECOLOGY, 1993, 2 (02) :113-118
[35]   Analysis of of dark crusts on the church of Nossa Senhora do Carmo in Rio de Janeiro, Brazil, using chemical, microscope and metabarcoding microbial identification techniques [J].
Gaylarde, Christine ;
Ogawa, Akiko ;
Beech, Iwona ;
Kowalski, Matthew ;
Baptista-Neto, Jose Antonio .
INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 2017, 117 :60-67
[36]   ROLE OF BLACK FUNGI IN COLOR-CHANGE AND BIODETERIORATION OF ANTIQUE MARBLES [J].
GORBUSHINA, AA ;
KRUMBEIN, WE ;
HAMMAN, CH ;
PANINA, L ;
SOUKHARJEVSKI, S ;
WOLLENZIEN, U .
GEOMICROBIOLOGY JOURNAL, 1993, 11 (3-4) :205-221
[37]  
Grote G, 1986, THESIS, P335
[38]   InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams [J].
Heberle, Henry ;
Meirelles, Gabriela Vaz ;
da Silva, Felipe R. ;
Telles, Guilherme P. ;
Minghim, Rosane .
BMC BIOINFORMATICS, 2015, 16
[39]   Ectomycorrhizal Community Structure of Salix and Betula spp. at a Saline Site in Central Poland in Relation to the Seasons and Soil Parameters [J].
Hrynkiewicz, Katarzyna ;
Szymanska, Sonia ;
Piernik, Agnieszka ;
Thiem, Dominika .
WATER AIR AND SOIL POLLUTION, 2015, 226 (04)
[40]   International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database-the quality controlled standard tool for routine identification of human and animal pathogenic fungi [J].
Irinyi, Laszlo ;
Serena, Carolina ;
Garcia-Hermoso, Dea ;
Arabatzis, Michael ;
Desnos-Ollivier, Marie ;
Vu, Duong ;
Cardinali, Gianluigi ;
Arthur, Ian ;
Normand, Anne-Cecile ;
Giraldo, Alejandra ;
Cassia da Cunha, Keith ;
Sandoval-Denis, Marcelo ;
Hendrickx, Marijke ;
Nishikaku, Angela Satie ;
de Azevedo Melo, Analy Salles ;
Merseguel, Karina Bellinghausen ;
Khan, Aziza ;
Parente Rocha, Juliana Alves ;
Sampaio, Paula ;
da Silva Briones, Marcelo Ribeiro ;
Carmona e Ferreira, Renata ;
de Medeiros Muniz, Mauro ;
Castanon-Olivares, Laura Rosio ;
Estrada-Barcenas, Daniel ;
Cassagne, Carole ;
Mary, Charles ;
Duan, Shu Yao ;
Kong, Fanrong ;
Sun, Annie Ying ;
Zeng, Xianyu ;
Zhao, Zuotao ;
Gantois, Nausicaa ;
Botterel, Francoise ;
Robbertse, Barbara ;
Schoch, Conrad ;
Gams, Walter ;
Ellis, David ;
Halliday, Catriona ;
Chen, Sharon ;
Sorrell, Tania C. ;
Piarroux, Renaud ;
Colombo, Arnaldo L. ;
Pais, Celia ;
de Hoog, Sybren ;
Zancope-Oliveira, Rosely Maria ;
Taylor, Maria Lucia ;
Toriello, Conchita ;
de Almeida Soares, Celia Maria ;
Delhaes, Laurence ;
Stubbe, Dirk .
MEDICAL MYCOLOGY, 2015, 53 (04) :313-337