The complete chloroplast genome sequence of rose-gold pussy willow, Salix gracilistyla Miq. (Salicaceae)

被引：6

作者：

Xi, Hong ^{[1
,2
]}

Park, Jongsun ^{[1
,2
]}

Kim, Yongsung ^{[1
,2
]}

机构：

[1] Infoboss Co Ltd, 301 Room,Haeun Bldg,670 Seolleung Ro, Seoul 06088, South Korea

[2] InfoBoss Res Ctr, Seoul, South Korea

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Salix gracilistyla; chloroplast genome; Salix; SSC inversion; Salix phylogeny; DIVERSITY; ALIGNMENT;

D O I：

10.1080/23802359.2019.1623115

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

To understand genetic background of Salix gracilistyla Miq., we presented its complete chloroplast genome which is 155,557 bp and has four sub regions: 84,530 bp of large single copy (LSC) and 16,218 bp of small single copy (SSC) regions are separated by 27,405 bp of inverted repeat (IR) regions including 130 genes (84 protein-coding gene, eight rRNAs, and 38 tRNAs). The overall GC content of the chloroplast genome is 36.7% and those in the LSC, SSC, and IR regions are 34.5%, 31.0%, and 41.9%, respectively. Phylogenetic trees show phylogenetic position of S. gracilistyla with low level of inter-species sequence variations.

引用

页码：2118 / 2120

页数：3

共 23 条

[1]

[Anonymous], COMPLETE CHLOROPLAST

[2]

[Anonymous], COMPLETE CHLOROPLAST

[3]

Argus G.W., 1997, SYSTEMATIC BOT MONOG, V52, P1, DOI [10.2307/25096638, DOI 10.2307/25096638]

[4] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[5] Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) [J].

Jeon, Jae-Hyeon ;

Park, Hyun-Seung ;

Park, Jee Young ;

Kang, Tae Sun ;

Kwon, Kisung ;

Kim, Yeon Bok ;

Han, Jong-Won ;

Kim, Seung Hyun ;

Sung, Sang Hyun ;

Yang, Tae-Jin .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :176-177

[6] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[7] Complete chloroplast genome sequence of the Salix koriyanagi Kimura ex Goerz (Salicaceae) [J].

Kim, Juhyeon ;

Kim, Yongsung ;

Park, Jongsun .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :549-550

[8] The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution [J].

Kim, Yongsung ;

Heo, Kyeong-In ;

Park, Jongsun .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :1310-1311

[9] The complete chloroplast genome sequence of Hibicus syriacus L. 'Mamonde' (Malvaceae) [J].

Kim, Yongsung ;

Oh, Yu Jin ;

Han, Kweon Young ;

Kim, Geun Ho ;

Ko, Jaeyoung ;

Park, Jongsun .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :558-559

[10] MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J].

Kumar, Sudhir ;

Stecher, Glen ;

Li, Michael ;

Knyaz, Christina ;

Tamura, Koichiro .

MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) :1547-1549

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