Potential of DNA barcoding for earthworm research in taxonomy and ecology

被引:58
作者
Decaens, Thibaud [1 ]
Porco, David [1 ,2 ]
Rougerie, Rodolphe [1 ,2 ]
Brown, George G. [3 ]
James, Samuel W. [4 ]
机构
[1] Univ Rouen, Ecol Lab, EA ECODIV 1293, FED SCALE,UFR Sci & Tech, F-76821 Mont St Aignan, France
[2] Univ Guelph, Biodivers Inst Ontario, Canadian Ctr DNA Barcoding, Guelph, ON N1G 2W1, Canada
[3] EMBRAPA Floresta, BR-83411000 Curitiba, Parana, Brazil
[4] Univ Iowa, Dept Biol, Iowa City, IA 52242 USA
基金
美国国家科学基金会;
关键词
Earthworm; DNA barcoding; Cryptic diversity; Species identification; Taxonomic crisis; Taxonomic deficit; SOIL BIODIVERSITY; INVASIVE EARTHWORMS; GENETIC-STRUCTURE; OLIGOCHAETA; MITOCHONDRIAL; MEGASCOLECIDAE; COMMUNITIES; DIVERSITY; FOREST; MICROSATELLITE;
D O I
10.1016/j.apsoil.2013.01.001
中图分类号
S15 [土壤学];
学科分类号
0903 ; 090301 ;
摘要
The biodiversity of soil animal communities is still poorly known. Most taxa, from the smaller body-sized to the large invertebrates of the macrofauna, suffer a strong taxonomic deficit. Earthworms comprise about 3700 described species, but this number probably only represents half of the actual worldwide diversity of the group. In many cases, earthworm species identification is impeded by the lack of stable and easily observable morphological characters, a high level of phenotypic variability, and the lack of diagnostic characters in juvenile stages. Another problem is the high level of expertise required for these identifications, in addition to the lack of expert identification services. These limitations are a serious issue in studies that focus on this group and which require reliable identifications and/or species lists (e.g. taxonomy, biogeography, community ecology, etc.). DNA barcoding, the use of a short DNA fragment as a genetic tag for species identification, offers both a better circumscription of species and a solution to streamline identifications. Preliminary studies have demonstrated the value of this approach for species discrimination, identification of new taxa, identification of juveniles, detection of cryptic diversity, and rapid surveys of biodiversity at different spatial scales. In this review, we illustrate these aspects with examples taken from published studies as well as from unpublished preliminary results of the "Earthworm Barcode of Life" (EarthwormBOL) campaign of the "International Barcode of Life" initiative (iBOL). (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:35 / 42
页数:8
相关论文
共 90 条
  • [1] Distribution and impacts of invasive earthworms in Canadian forest ecosystems
    Addison, J. A.
    [J]. BIOLOGICAL INVASIONS, 2009, 11 (01) : 59 - 79
  • [2] Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
    Amend, Anthony S.
    Seifert, Keith A.
    Bruns, Thomas D.
    [J]. MOLECULAR ECOLOGY, 2010, 19 (24) : 5555 - 5565
  • [3] Skilled eyes are needed to go on studying the richness of the soil
    Henri Andre
    Xavier Ducarme
    Jo Anderson
    David Crossley Jr
    Hartmut Koehler
    Maurizio Paoletti
    David Walter
    Philippe Lebrun
    [J]. Nature, 2001, 409 (6822) : 761 - 761
  • [4] Soil biodiversity:: myth, reality or conning?
    André, HM
    Ducarme, X
    Lebrun, P
    [J]. OIKOS, 2002, 96 (01) : 3 - 24
  • [5] THE SOIL FAUNA - THE OTHER LAST BIOTIC FRONTIER
    ANDRE, HM
    NOTI, MI
    LEBRUN, P
    [J]. BIODIVERSITY AND CONSERVATION, 1994, 3 (01) : 45 - 56
  • [6] Computers in biology - Linking soil biodiversity and ecosystem function - The taxonomic dilemma
    Behan-Pelletier, V
    Newton, G
    [J]. BIOSCIENCE, 1999, 49 (02) : 149 - 153
  • [7] Nuclear insertions and heteroplasmy of mitochondrial DNA as two sources of intra-individual genomic variation in grasshoppers
    Berthier, Karine
    Chapuis, Marie-Pierre
    Moosavi, Seyed M.
    Tohidi-Esfahani, Donya
    Sword, Gregory A.
    [J]. SYSTEMATIC ENTOMOLOGY, 2011, 36 (02) : 285 - 299
  • [8] Tracking earthworm communities from soil DNA
    Bienert, Friederike
    De Danieli, Sebastien
    Miquel, Christian
    Coissac, Eric
    Poillot, Carole
    Brun, Jean-Jacques
    Taberlet, Pierre
    [J]. MOLECULAR ECOLOGY, 2012, 21 (08) : 2017 - 2030
  • [9] Using Population Genetic Theory and DNA Sequences for Species Detection and Identification in Asexual Organisms
    Birky, C. William, Jr.
    Adams, Joshua
    Gemmel, Marlea
    Perry, Julia
    [J]. PLOS ONE, 2010, 5 (05):
  • [10] Blakemore R. J., 2010, Opuscula Zoologica (Budapest), V41, P191