ACOGNA: An Efficient Method for Protein-Protein Interaction Network Alignment

被引:0
作者
Ha Tran Ngoc [1 ]
Huan Hoang Xuan [2 ]
机构
[1] Thai Nguyen Univ Educ, Thai Nguyen, Vietnam
[2] Vietnam Natl Univ Hanoi, Hanoi, Vietnam
来源
2016 EIGHTH INTERNATIONAL CONFERENCE ON KNOWLEDGE AND SYSTEMS ENGINEERING (KSE) | 2016年
关键词
Ant colony optimization; PPI network; network alignment; PAIRWISE ALIGNMENT; GLOBAL ALIGNMENT; YEAST;
D O I
暂无
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Protein-protein interaction network alignment enables us to identify orthologous proteins, predict protein functions and build evolutionary relationships of species. This article introduces an algorithm for global alignment of protein-protein interaction network based on ant colony optimization (ACO) method. The experimental results offer outstanding advantages of the proposed algorithms.
引用
收藏
页码:7 / 12
页数:6
相关论文
共 50 条
  • [31] ModuleSearch: finding functional modules in a protein-protein interaction network
    Cui, Guangyu
    Shrestha, Rojan
    Han, Kyungsook
    COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING, 2012, 15 (07) : 691 - 699
  • [32] NatalieQ: A web server for protein-protein interaction network querying
    El-Kebir, Mohammed
    Brandt, Bernd W.
    Heringa, Jaap
    Klau, Gunnar W.
    BMC SYSTEMS BIOLOGY, 2014, 8
  • [33] Protein function prediction using neighbor relativity in protein-protein interaction network
    Moosavi, Sobhan
    Rahgozar, Masoud
    Rahimi, Amir
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2013, 43 : 11 - 16
  • [34] Topology analysis and visualization of Potyvirus protein-protein interaction network
    Bosque, Gabriel
    Folch-Fortuny, Abel
    Pico, Jesus
    Ferrer, Alberto
    Elena, Santiago F.
    BMC SYSTEMS BIOLOGY, 2014, 8 : 129
  • [35] CPL: Detecting Protein Complexes by Propagating Labels on Protein-Protein Interaction Network
    Dai, Qi-Guo
    Guo, Mao-Zu
    Liu, Xiao-Yan
    Teng, Zhi-Xia
    Wang, Chun-Yu
    JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2014, 29 (06) : 1083 - 1093
  • [36] The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction
    Fang, Yi
    Sun, Mengtian
    Dai, Guoxian
    Ramani, Karthik
    INTELLIGENT COMPUTING IN BIOINFORMATICS, 2014, 8590 : 487 - 493
  • [37] An efficient algorithm for pairwise local alignment of protein interaction networks
    Chen, Wenbin
    Schmidt, Matthew
    Tian, Wenhong
    Samatova, Nagiza F.
    Zhang, Shaohong
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2015, 13 (02)
  • [38] Reconstruction of the Protein-Protein Interaction Network for Protein Complexes Identification by Walking on the Protein Pair Fingerprints Similarity Network
    Xu, Bo
    Liu, Yu
    Lin, Chi
    Dong, Jie
    Liu, Xiaoxia
    He, Zengyou
    FRONTIERS IN GENETICS, 2018, 9
  • [39] IMAP: An Iterative Method for Aligning Protein-Protein Interaction Networks
    Cao, Xuezhi
    Chen, Zhiyu
    Zhang, Xinyi
    Yu, Yong
    2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2017, : 317 - 324
  • [40] Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets
    Hormozdiari, Fereydoun
    Salari, Raheleh
    Bafna, Vineet
    Sahinalp, S. Cenk
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2010, 17 (05) : 669 - 684