ACOGNA: An Efficient Method for Protein-Protein Interaction Network Alignment

被引：0
|
作者：
Ha Tran Ngoc [1 ]
Huan Hoang Xuan [2 ]
机构：
[1] Thai Nguyen Univ Educ, Thai Nguyen, Vietnam
[2] Vietnam Natl Univ Hanoi, Hanoi, Vietnam
来源：
2016 EIGHTH INTERNATIONAL CONFERENCE ON KNOWLEDGE AND SYSTEMS ENGINEERING (KSE) | 2016年
关键词：
Ant colony optimization; PPI network; network alignment; PAIRWISE ALIGNMENT; GLOBAL ALIGNMENT; YEAST;
D O I：
暂无
中图分类号：
TP [自动化技术、计算机技术];
学科分类号：
0812 ;
摘要：
Protein-protein interaction network alignment enables us to identify orthologous proteins, predict protein functions and build evolutionary relationships of species. This article introduces an algorithm for global alignment of protein-protein interaction network based on ant colony optimization (ACO) method. The experimental results offer outstanding advantages of the proposed algorithms.
引用
收藏
页码：7 / 12
页数：6
相关论文
共 50 条
  • [1] The protein-protein interaction network alignment using recurrent neural network
    Mahdipour, Elham
    Ghasemzadeh, Mohammad
    MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, 2021, 59 (11-12) : 2263 - 2286
  • [2] Indexing a protein-protein interaction network expedites network alignment
    Md Mahmudul Hasan
    Tamer Kahveci
    BMC Bioinformatics, 16
  • [3] HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks
    Hashemifar, Somaye
    Xu, Jinbo
    BIOINFORMATICS, 2014, 30 (17) : I438 - I444
  • [4] Indexing a protein-protein interaction network expedites network alignment
    Hasan, Md Mahmudul
    Kahveci, Tamer
    BMC BIOINFORMATICS, 2015, 16
  • [5] The protein-protein interaction network alignment using recurrent neural network
    Elham Mahdipour
    Mohammad Ghasemzadeh
    Medical & Biological Engineering & Computing, 2021, 59 : 2263 - 2286
  • [6] An efficient algorithm for global alignment of protein-protein interaction networks
    Do Duc Dong
    Dang Thanh Hai
    Tran Ngoc Ha
    Dang Cao Cuong
    Hoang Xuan Huan
    2015 INTERNATIONAL CONFERENCE ON ADVANCED TECHNOLOGIES FOR COMMUNICATIONS (ATC), 2015, : 332 - 336
  • [7] Unified Alignment of Protein-Protein Interaction Networks
    Malod-Dognin, Noel
    Ban, Kristina
    Przulj, Natasa
    SCIENTIFIC REPORTS, 2017, 7
  • [8] AligNet: alignment of protein-protein interaction networks
    Alcala, Adria
    Alberich, Ricardo
    Llabres, Merce
    Rossello, Francesc
    Valiente, Gabriel
    BMC BIOINFORMATICS, 2020, 21 (Suppl 6)
  • [9] Global Alignment of Protein-Protein Interaction Networks: A Survey
    Elmsallati, Ahed
    Clark, Connor
    Kalita, Jugal
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 13 (04) : 689 - 705
  • [10] A review of protein-protein interaction network alignment: From pathway comparison to global alignment
    Ma, Cheng-Yu
    Liao, Chung-Shou
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2020, 18 (2647-2656) : 2647 - 2656
12345