Agrobacterium tumefaciens VirB8 structure reveals potential protein-protein interaction sites

被引:66
作者
Bailey, S
Ward, D
Middleton, R
Grossmann, JG
Zambryski, PC [1 ]
机构
[1] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[2] Council Cent Lab Res Councils, Daresbury Lab, Mol Biophys Grp, Warrington WA4 4AD, Cheshire, England
关键词
bacterial protein export; conjugation; type IV secretion;
D O I
10.1073/pnas.0511216103
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bacterial type IV secretion systems (T4SS) translocate DNA and/or proteins to recipient cells, thus providing a mechanism for conjugative transfer of genetic material and bacterial pathogenesis. Here we describe the first structure of a core component from the archetypal Agrobacterium tumefaciens T4SS: the 2.2-angstrom resolution crystal structure of the VirB8 periplasmic domain (pVirB8(AT)). VirB8 forms a dimer in the crystal, and we identify residues likely important for stabilization of the dinner interface. Structural comparison of pVirB8AT with Brucella suis VirB8 confirms that the monomers have a similar fold. In addition, the pVirB8AT dimer superimposes very closely on the B. suis VirB8 dimer, supporting the proposal that dinner formation in the crystal reflects self-interactions that are biologically significant. The evolutionary conservation level for each residue was obtained from a data set of 84 VirB8 homologs and projected onto the protein structure to indicate conserved surface patches that likely contact other T4SS proteins.
引用
收藏
页码:2582 / 2587
页数:6
相关论文
共 30 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   The 1.6 angstrom resolution crystal structure of nuclear transport factor 2 (NTF2) [J].
Bullock, TL ;
Clarkson, WD ;
Kent, HM ;
Stewart, M .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (03) :422-431
[3]   Definition of a bacterial type IV secretion pathway for a DNA substrate [J].
Cascales, E ;
Christie, PJ .
SCIENCE, 2004, 304 (5674) :1170-1173
[4]   Crystal structure and enzyme mechanism of Δ5-3-ketosteroid isomerase from Pseudomonas testosteroni [J].
Cho, HS ;
Choi, G ;
Choi, KY ;
Oh, BH .
BIOCHEMISTRY, 1998, 37 (23) :8325-8330
[5]   Biogenesis, architecture, and function of bacterial type IV secretion systems [J].
Christie, PJ ;
Atmakuri, K ;
Krishnamoorthy, V ;
Jakubowski, S ;
Cascales, E .
ANNUAL REVIEW OF MICROBIOLOGY, 2005, 59 :451-485
[6]   The Agrobacterium T-DNA transport pore proteins VirB8, VirB9, and VirB10 interact with one another [J].
Das, A ;
Xie, YH .
JOURNAL OF BACTERIOLOGY, 2000, 182 (03) :758-763
[7]   Profile hidden Markov models [J].
Eddy, SR .
BIOINFORMATICS, 1998, 14 (09) :755-763
[8]   Structural similarity in the absence of sequence homology of the messenger RNA export factors Mtr2 and p15 [J].
Fribourg, S ;
Conti, E .
EMBO REPORTS, 2003, 4 (07) :699-703
[9]   ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information [J].
Glaser, F ;
Pupko, T ;
Paz, I ;
Bell, RE ;
Bechor-Shental, D ;
Martz, E ;
Ben-Tal, N .
BIOINFORMATICS, 2003, 19 (01) :163-164
[10]   The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase [J].
Gomis-Rüth, FX ;
Moncalián, G ;
Pérez-Luque, R ;
González, A ;
Cabezón, E ;
de la Cruz, F ;
Coll, M .
NATURE, 2001, 409 (6820) :637-641