Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus

被引:29
作者
Tsukazaki, T
Mori, H
Fukai, S
Numata, T
Perederina, A
Adachi, H
Matsumura, H
Takano, K
Murakami, S
Inoue, T
Mori, Y
Sasaki, T
Vassylyev, DG
Nureki, O [1 ]
Ito, K
机构
[1] Tokyo Inst Technol, Grad Sch Biosci & Biotechnol, Dept Biol Informat, Kanagawa 2268501, Japan
[2] Kyoto Univ, Inst Virus Res, Kyoto 6068507, Japan
[3] Univ Alabama Birmingham, Sch Med, Dept Biochem & Mol Genet, Birmingham, AL 35294 USA
[4] Univ Alabama Birmingham, Sch Dent, Dept Biochem & Mol Genet, Birmingham, AL 35294 USA
[5] SOSHO Inc, Osaka 5670085, Japan
[6] Osaka Univ, Dept Elect Elect & Informat Engn, Suita, Osaka 5650871, Japan
[7] JST, CREST, Saitama 3320012, Japan
[8] Osaka Univ, Dept Chem Mat, Suita, Osaka 5650871, Japan
[9] Osaka Univ, Dept Mat & Life Sci, Suita, Osaka 5650871, Japan
[10] JST, PRESTO, Saitama 3320012, Japan
[11] Osaka Univ, Inst Sci & Ind Res, Osaka 5670047, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2006年 / 62卷
关键词
D O I
10.1107/S1744309106007779
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Thermus thermophilus has a multi-path membrane protein, TSecDF, as a single-chain homologue of Escherichia coli SecD and SecF, which form a translocon-associated complex required for efficient preprotein translocation and membrane-protein integration. Here, the cloning, expression in E. coli, purification and crystallization of TSecDF are reported. Overproduced TSecDF was solubilized with dodecylmaltoside, chromatographically purified and crystallized by vapour diffusion in the presence of polyethylene glycol. The crystals yielded a maximum resolution of 4.2 angstrom upon X-ray irradiation, revealing that they belonged to space group P4(3)2(1)2. Attempts were made to improve the diffraction quality of the crystals by combinations of micro-stirring, laser-light irradiation and dehydration, which led to the eventual collection of complete data sets at 3.74 angstrom resolution and preliminary success in the single-wavelength anomalous dispersion analysis. These results provide information that is essential for the determination of the three-dimensional structure of this important membrane component of the protein-translocation machinery.
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收藏
页码:376 / 380
页数:5
相关论文
共 29 条
[1]   Protein crystallization by combining laser irradiation and solution-stirring techniques [J].
Adachi, H ;
Niino, A ;
Murakami, S ;
Takano, K ;
Matsumura, H ;
Kinoshita, T ;
Warizaya, M ;
Inoue, T ;
Mori, Y ;
Sasaki, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS BRIEF COMMUNICATIONS & REVIEW PAPERS, 2005, 44 (03) :1365-1366
[2]   Laser irradiated growth of protein crystal [J].
Adachi, H ;
Takano, K ;
Hosokawa, Y ;
Inoue, T ;
Mori, Y ;
Matsumura, H ;
Yoshimura, M ;
Tsunaka, Y ;
Morikawa, M ;
Kanaya, S ;
Masuhara, H ;
Kai, Y ;
Sasaki, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 2-LETTERS & EXPRESS LETTERS, 2003, 42 (7B) :L798-L800
[3]   Application of a stirring method to micro-scale and vapor diffusion protein crystallization [J].
Adachi, H ;
Takano, K ;
Yoshimura, M ;
Mori, Y ;
Sasaki, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 2-LETTERS, 2003, 42 (3B) :L314-L315
[4]   SECY PROTEIN, A MEMBRANE-EMBEDDED SECRETION FACTOR OF ESCHERICHIA-COLI, IS CLEAVED BY THE OMPT PROTEASE INVITRO [J].
AKIYAMA, Y ;
ITO, K .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1990, 167 (02) :711-715
[5]   SECD AND SECF ARE REQUIRED FOR THE PROTON ELECTROCHEMICAL GRADIENT STIMULATION OF PREPROTEIN TRANSLOCATION [J].
ARKOWITZ, RA ;
WICKNER, W .
EMBO JOURNAL, 1994, 13 (04) :954-963
[6]   SecDF of Bacillus subtilis, a molecular Siamese twin required for the efficient secretion of proteins [J].
Bolhuis, A ;
Broekhuizen, CP ;
Sorokin, A ;
van Roosmalen, ML ;
Venema, G ;
Bron, S ;
Quax, WJ ;
van Dijl, JM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (33) :21217-21224
[7]   Disulfide bridge formation between SecY and a translocating polypeptide localizes the translocation pore to the center of SecY [J].
Cannon, KS ;
Or, E ;
Clemons, WM ;
Shibata, Y ;
Rapoport, TA .
JOURNAL OF CELL BIOLOGY, 2005, 169 (02) :219-225
[8]   Involvement of SecDF and YidC in the membrane insertion of M13 procoat mutants [J].
Chen, MY ;
Xie, K ;
Yuan, JJ ;
Yi, L ;
Facey, SJ ;
Pradel, N ;
Wu, LF ;
Kuhn, A ;
Dalbey, RE .
BIOCHEMISTRY, 2005, 44 (31) :10741-10749
[9]   The SecDFyajC domain of preprotein translocase controls preprotein movement by regulating SecA membrane cycling [J].
Duong, F ;
Wickner, W .
EMBO JOURNAL, 1997, 16 (16) :4871-4879
[10]   SecA membrane cycling at SecYEG is driven by distinct ATP binding and hydrolysis events and is regulated by SecD and SecF [J].
Economou, A ;
Pogliano, JA ;
Beckwith, J ;
Oliver, DB ;
Wickner, W .
CELL, 1995, 83 (07) :1171-1181