Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

被引:100
作者
Hura, Greg L. [1 ]
Budworth, Helen [2 ]
Dyer, Kevin N. [1 ]
Rambo, Robert P. [1 ]
Hammel, Michal [1 ]
McMurray, Cynthia T. [2 ]
Tainer, John A. [2 ,3 ]
机构
[1] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Life Sci, Berkeley, CA 94720 USA
[3] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
关键词
SCATTERING; RECOGNITION;
D O I
10.1038/nmeth.2453
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:453 / 454
页数:2
相关论文
共 9 条
[1]   Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding [J].
Dunkle, Jack A. ;
Wang, Leyi ;
Feldman, Michael B. ;
Pulk, Arto ;
Chen, Vincent B. ;
Kapral, Gary J. ;
Noeske, Jonas ;
Richardson, Jane S. ;
Blanchard, Scott C. ;
Cate, Jamie H. Doudna .
SCIENCE, 2011, 332 (6032) :981-984
[2]   Mechanism of mismatch recognition revealed by human MutSβ bound to unpaired DNA loops [J].
Gupta, Shikha ;
Gellert, Martin ;
Yang, Wei .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (01) :72-U91
[3]   Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS) [J].
Hura, Greg L. ;
Menon, Angeli L. ;
Hammel, Michal ;
Rambo, Robert P. ;
Poole, Farris L., II ;
Tsutakawa, Susan E. ;
Jenney, Francis E., Jr. ;
Classen, Scott ;
Frankel, Kenneth A. ;
Hopkins, Robert C. ;
Yang, Sung-jae ;
Scott, Joseph W. ;
Dillard, Bret D. ;
Adams, Michael W. W. ;
Tainer, John A. .
NATURE METHODS, 2009, 6 (08) :606-U83
[4]   Conformational trapping of Mismatch Recognition Complex MSH2/MSH3 on repair-resistant DNA loops [J].
Lang, Walter H. ;
Coats, Julie E. ;
Majka, Jerzy ;
Hura, Greg L. ;
Lin, Yuyen ;
Rasnik, Ivan ;
McMurray, Cynthia T. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (42) :E837-E844
[5]   SMALL-ANGLE SCATTERING - INFORMATION-CONTENT AND ERROR ANALYSIS [J].
MOORE, PB .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1980, 13 (APR) :168-175
[6]   The nucleotide binding dynamics of human MSH2-MSH3 are lesion dependent [J].
Owen, Barbara A. L. ;
Lang, Walter H. ;
McMurray, Cynthia T. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (05) :550-557
[7]   CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates [J].
Svergun, D ;
Barberato, C ;
Koch, MHJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1995, 28 :768-773
[8]   Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism [J].
Yamagata, Atsushi ;
Tainer, John A. .
EMBO JOURNAL, 2007, 26 (03) :878-890
[9]   Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates [J].
Yang, Yuedong ;
Faraggi, Eshel ;
Zhao, Huiying ;
Zhou, Yaoqi .
BIOINFORMATICS, 2011, 27 (15) :2076-2082