Further understanding of the biased diffusion for peptide adsorption on uncharged solid surfaces that strongly interact with water molecules

被引:4
作者
Qiu, Ruosang [1 ]
Xiao, Jie [2 ]
Chen, Xiao Dong [1 ,2 ]
机构
[1] Xiamen Univ, Coll Chem & Chem Engn, Dept Chem & Biochem Engn, Xiamen 361005, Fujian, Peoples R China
[2] Soochow Univ, Coll Chem Chem Engn & Mat Sci, Sch Chem & Environm Engn, Suzhou Key Lab Green Chem Engn, Suzhou 215123, Jiangsu, Peoples R China
关键词
Peptide adsorption; Biased diffusion; Lattice Monte Carlo model; MARTINI force field; The electrostatic force; The Lennard-Jones force; STAINLESS-STEEL SURFACE; FORCE-FIELD; BETA-LACTOGLOBULIN; HEAT-EXCHANGERS; PROTEIN; DYNAMICS; BINDING; MODEL; SIMULATIONS; INTERFACE;
D O I
10.1016/j.colsurfa.2017.01.031
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular-level understanding of protein adsorption on uncharged solid surfaces has been a challenge due to experimental limitations. Recent computational efforts have demonstrated that the adsorption process starts from a biased diffusion phase, where the peptide or protein tends to move towards the solid surface from a position beyond the interaction range that the surface can reach. The strong interactions between the solid surface and the water molecules adjacent or near it would establish well-oriented water molecular 'layers', which are said to bring the 'net' electrostatic interactions hence exhibiting longer distance attractions. In this work, the peptide adsorption process has been investigated by resorting to a unique mesoscale modeling approach. Here, quantitative analyses on the adsorption of an A3 peptide on uncharged solid surfaces that strongly interact with water have revealed that, different from previous reports, the biased diffusion could be mainly attributed to the Lennard-Jones (41) forces, whose 'net' value could reach one order of magnitude bigger than the 'net' electrostatic force originated from the aggregated water layers' close to the surface. In addition to offering the new understanding of the adsorption mechanisms, promising applications of the current method for large systems beyond a single peptide are also discussed. (C) 2017 Elsevier B.V. All rights reserved.
引用
收藏
页码:197 / 207
页数:11
相关论文
共 51 条
[1]   A critical review of milk fouling in heat exchangers [J].
Bansal, Bipan ;
Chen, Xiao Dong .
COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY, 2006, 5 (02) :27-33
[2]  
Berendsen H. J. C., 1981, INTERMOLECULAR FORCE, P331, DOI [DOI 10.1007/978-94-015-7658-121, DOI 10.1007/978-94-015-7658-1_21]
[3]   Analysis by Raman spectroscopy of the conformational structure of whey proteins constituting fouling deposits during the processing in a heat exchanger [J].
Blanpain-Avet, P. ;
Hedoux, A. ;
Guinet, Y. ;
Paccou, L. ;
Petit, J. ;
Six, T. ;
Delaplace, G. .
JOURNAL OF FOOD ENGINEERING, 2012, 110 (01) :86-94
[4]   ANTIMICROBIAL IRRIGATION OF DEEP POCKETS TO SUPPLEMENT NON-SURGICAL PERIODONTAL THERAPY .2. DAILY IRRIGATION [J].
BRAATZ, L ;
GARRETT, S ;
CLAFFEY, N ;
EGELBERG, J .
JOURNAL OF CLINICAL PERIODONTOLOGY, 1985, 12 (08) :630-638
[5]  
Branden C., 1991, SCIENCE, V253, P685
[6]   Ice 1h/water interface of the SPC/E model: Molecular dynamics simulations of the equilibrium basal and prism interfaces [J].
Bryk, T ;
Haymet, ADJ .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (22) :10258-10268
[7]   THE BOND FLUCTUATION METHOD - A NEW EFFECTIVE ALGORITHM FOR THE DYNAMICS OF POLYMERS IN ALL SPATIAL DIMENSIONS [J].
CARMESIN, I ;
KREMER, K .
MACROMOLECULES, 1988, 21 (09) :2819-2823
[8]   Fluid dynamic gauging for measuring the strength of soft deposits [J].
Chew, JYM ;
Paterson, WR ;
Wilson, DI .
JOURNAL OF FOOD ENGINEERING, 2004, 65 (02) :175-187
[9]   Improved Parameters for the Martini Coarse-Grained Protein Force Field [J].
de Jong, Djurre H. ;
Singh, Gurpreet ;
Bennett, W. F. Drew ;
Arnarez, Clement ;
Wassenaar, Tsjerk A. ;
Schafer, Lars V. ;
Periole, Xavier ;
Tieleman, D. Peter ;
Marrink, Siewert J. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (01) :687-697
[10]   INTERDIFFUSION AND SELF-DIFFUSION IN POLYMER MIXTURES - A MONTE-CARLO STUDY [J].
DEUTSCH, HP ;
BINDER, K .
JOURNAL OF CHEMICAL PHYSICS, 1991, 94 (03) :2294-2304