Progress on Bioinformatic Research of lncRNA

被引:2
作者
Yuan Jia-Pei [1 ]
Zhang Hao-Wen [1 ]
Lu Zhi [1 ]
机构
[1] Tsinghua Univ, Sch Life Sci, MOE Key Lab Bioinformat, Beijing 100084, Peoples R China
关键词
noncoding RNA (ncRNA); long noncoding RNA (lncRNA); prediction of ncRNA; machine learning; LONG NONCODING RNAS; GENE; ANNOTATION; PREDICTION; DNA; TRANSCRIPTION; FIBRILLARIN; MUTATION; REVEALS; PRODUCT;
D O I
10.3724/SP.J.1206.2013.00266
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Noncoding RNA (ncRNA) refers to any RNA that is functional without being translated into proteins. Recently, people have paid more and more attention on various types of novel ncRNAs. Some small ncRNAs have already been identified and well studied, such as microRNAs, snoRNAs, tRNA, etc. However, the fields of long noncoding RNA (lncRNA) have not been well explored. This paper reviewed the research progress of ncRNA, especially the lncRNA, including the historical overview, the basic characteristics and the relationship with diseases. We also compared the prediction methods of ncRNA, and introduced an integrative strategy to combine the high throughput sequencing data in the prediction of ncRNA.
引用
收藏
页码:634 / 640
页数:7
相关论文
共 56 条
  • [11] Tuning in to the signals: noncoding sequence conservation in vertebrate genornes
    Elgar, Greg
    Vavouri, Tanya
    [J]. TRENDS IN GENETICS, 2008, 24 (07) : 344 - 352
  • [12] Discovery and characterization of chromatin states for systematic annotation of the human genome
    Ernst, Jason
    Kellis, Manolis
    [J]. NATURE BIOTECHNOLOGY, 2010, 28 (08) : 817 - U94
  • [13] Non-coding RNAs in human disease
    Esteller, Manel
    [J]. NATURE REVIEWS GENETICS, 2011, 12 (12) : 861 - 874
  • [14] MicroRNAs in Cancer
    Lee, Yong Sun
    Dutta, Anindya
    [J]. ANNUAL REVIEW OF PATHOLOGY-MECHANISMS OF DISEASE, 2009, 4 : 199 - 227
  • [15] A MUTATION IN THE TRANSFER RNALEU(UUR) GENE ASSOCIATED WITH THE MELAS SUBGROUP OF MITOCHONDRIAL ENCEPHALOMYOPATHIES
    GOTO, Y
    NONAKA, I
    HORAI, S
    [J]. NATURE, 1990, 348 (6302) : 651 - 653
  • [16] miRBase: microRNA sequences, targets and gene nomenclature
    Griffiths-Jones, Sam
    Grocock, Russell J.
    van Dongen, Stijn
    Bateman, Alex
    Enright, Anton J.
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D140 - D144
  • [17] Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    Guttman, Mitchell
    Amit, Ido
    Garber, Manuel
    French, Courtney
    Lin, Michael F.
    Feldser, David
    Huarte, Maite
    Zuk, Or
    Carey, Bryce W.
    Cassady, John P.
    Cabili, Moran N.
    Jaenisch, Rudolf
    Mikkelsen, Tarjei S.
    Jacks, Tyler
    Hacohen, Nir
    Bernstein, Bradley E.
    Kellis, Manolis
    Regev, Aviv
    Rinn, John L.
    Lander, Eric S.
    [J]. NATURE, 2009, 458 (7235) : 223 - 227
  • [18] Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
    Heo, Jae Bok
    Sung, Sibum
    [J]. SCIENCE, 2011, 331 (6013) : 76 - 79
  • [19] U3 snoRNP associates with fibrillarin a component of the scleroderma clumpy nucleolar domain
    Herrera-Esparza, R
    Kruse, L
    von Essen, M
    Campos, L
    Barbosa, O
    Bollain, JJ
    Badillo, I
    Avalos-Díaz, E
    [J]. ARCHIVES OF DERMATOLOGICAL RESEARCH, 2002, 294 (07) : 310 - 317
  • [20] CHROMOSOMAL RNA - ITS PROPERTIES
    HOLMES, DS
    SANDER, G
    BONNER, J
    MAYFIELD, JE
    [J]. SCIENCE, 1972, 177 (4043) : 72 - +