Progress on Bioinformatic Research of lncRNA

被引:2
作者
Yuan Jia-Pei [1 ]
Zhang Hao-Wen [1 ]
Lu Zhi [1 ]
机构
[1] Tsinghua Univ, Sch Life Sci, MOE Key Lab Bioinformat, Beijing 100084, Peoples R China
关键词
noncoding RNA (ncRNA); long noncoding RNA (lncRNA); prediction of ncRNA; machine learning; LONG NONCODING RNAS; GENE; ANNOTATION; PREDICTION; DNA; TRANSCRIPTION; FIBRILLARIN; MUTATION; REVEALS; PRODUCT;
D O I
10.3724/SP.J.1206.2013.00266
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Noncoding RNA (ncRNA) refers to any RNA that is functional without being translated into proteins. Recently, people have paid more and more attention on various types of novel ncRNAs. Some small ncRNAs have already been identified and well studied, such as microRNAs, snoRNAs, tRNA, etc. However, the fields of long noncoding RNA (lncRNA) have not been well explored. This paper reviewed the research progress of ncRNA, especially the lncRNA, including the historical overview, the basic characteristics and the relationship with diseases. We also compared the prediction methods of ncRNA, and introduced an integrative strategy to combine the high throughput sequencing data in the prediction of ncRNA.
引用
收藏
页码:634 / 640
页数:7
相关论文
共 56 条
  • [1] Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)
    Agarwal, Sumeet
    Vaz, Candida
    Bhattacharya, Alok
    Srinivasan, Ashwin
    [J]. BMC BIOINFORMATICS, 2010, 11
  • [2] THE PRODUCT OF THE H19 GENE MAY FUNCTION AS AN RNA
    BRANNAN, CI
    DEES, EC
    INGRAM, RS
    TILGHMAN, SM
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 1990, 10 (01) : 28 - 36
  • [3] THE PRODUCT OF THE MOUSE XIST GENE IS A 15 KB INACTIVE X-SPECIFIC TRANSCRIPT CONTAINING NO CONSERVED ORF AND LOCATED IN THE NUCLEUS
    BROCKDORFF, N
    ASHWORTH, A
    KAY, GF
    MCCABE, VM
    NORRIS, DP
    COOPER, PJ
    SWIFT, S
    RASTAN, S
    [J]. CELL, 1992, 71 (03) : 515 - 526
  • [4] NONCODE v3.0: integrative annotation of long noncoding RNAs
    Bu, Dechao
    Yu, Kuntao
    Sun, Silong
    Xie, Chaoyong
    Skogerbo, Geir
    Miao, Ruoyu
    Xiao, Hui
    Liao, Qi
    Luo, Haitao
    Zhao, Guoguang
    Zhao, Haitao
    Liu, Zhiyong
    Liu, Changning
    Chen, Runsheng
    Zhao, Yi
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D210 - D215
  • [5] A mitochondrial DNA tRNA(Val) point mutation associated with adult-onset Leigh syndrome
    Chalmers, RM
    Lamont, PJ
    Nelson, I
    Ellison, DW
    Thomas, NH
    Harding, AE
    Hammans, SR
    [J]. NEUROLOGY, 1997, 49 (02) : 589 - 592
  • [6] GtRNAdb: a database of transfer RNA genes detected in genomic sequence
    Chan, Patricia P.
    Lowe, Todd M.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : D93 - D97
  • [7] MSARI: Multiple sequence alignments for statistical detection of RNA secondary structure
    Coventry, A
    Kleitman, DJ
    Berger, B
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (33) : 12102 - 12107
  • [8] Causes and consequences of microRNA dysregulation in cancer
    Croce, Carlo M.
    [J]. NATURE REVIEWS GENETICS, 2009, 10 (10) : 704 - 714
  • [9] ddbRNA: detection of conserved secondary structures in multiple alignments
    di Bernardo, D
    Down, T
    Hubbard, T
    [J]. BIOINFORMATICS, 2003, 19 (13) : 1606 - 1611
  • [10] The C-value paradox, junk DNA and ENCODE
    Eddy, Sean R.
    [J]. CURRENT BIOLOGY, 2012, 22 (21) : R898 - R899