Tumor heterogeneity estimation for radiomics in cancer

被引:23
作者
Eloyan, Ani [1 ]
Yue, Mun Sang [2 ]
Khachatryan, Davit [3 ]
机构
[1] Brown Univ, Dept Biostat, Providence, RI 02021 USA
[2] Gilead Sci Inc, Dept Biostat, 353 Lakeside Dr, Foster City, CA 94404 USA
[3] Babson Coll, Div Math & Sci, Babson Pk, MA 02157 USA
关键词
cancer imaging; computed tomography; image segmentation; machine learning; Markov random fields; TEXTURAL FEATURES; SURVIVAL-DATA; MODEL; SEGMENTATION;
D O I
10.1002/sim.8749
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Radiomics is an emerging field of medical image analysis research where quantitative measurements are obtained from radiological images that can be utilized to predict patient outcomes and inform treatment decisions. Cancer patients routinely undergo radiological evaluations when images of various modalities including computed tomography, positron emission tomography, and magnetic resonance images are collected for diagnosis and for evaluation of disease progression. Tumor characteristics, often referred to as measures oftumor heterogeneity, can be computed using these clinical images and used as predictors of disease progression and patient survival. Several approaches for quantifying tumor heterogeneity have been proposed, including intensity histogram-based measures, shape and volume-based features, and texture analysis. Taking into account the topology of the tumors we propose a statistical framework for estimating tumor heterogeneity using clustering based on Markov random field theory. We model the voxel intensities using a Gaussian mixture model using a Gibbs prior to incorporate voxel neighborhood information. We propose a novel approach to choosing the number of mixture components. Subsequently, we show that the proposed procedure outperforms the existing approaches when predicting lung cancer survival.
引用
收藏
页码:4704 / 4723
页数:20
相关论文
共 43 条
[1]   Highly efficient carrier multiplication in PbS nanosheets [J].
Aerts, Michiel ;
Bielewicz, Thomas ;
Klinke, Christian ;
Grozema, Ferdinand C. ;
Houtepen, Arjan J. ;
Schins, Juleon M. ;
Siebbeles, Laurens D. A. .
NATURE COMMUNICATIONS, 2014, 5
[2]   COX REGRESSION-MODEL FOR COUNTING-PROCESSES - A LARGE SAMPLE STUDY [J].
ANDERSEN, PK ;
GILL, RD .
ANNALS OF STATISTICS, 1982, 10 (04) :1100-1120
[3]  
[Anonymous], 2015, Data from NSCLC-radiomics-genomics
[4]   Tailoring sparse multivariable regression techniques for prognostic single-nucleotide polymorphism signatures [J].
Binder, H. ;
Benner, A. ;
Bullinger, L. ;
Schumacher, M. .
STATISTICS IN MEDICINE, 2013, 32 (10) :1778-1791
[5]   Boosting for high-dimensional time-to-event data with competing risks [J].
Binder, Harald ;
Allignol, Arthur ;
Schumacher, Martin ;
Beyersmann, Jan .
BIOINFORMATICS, 2009, 25 (07) :890-896
[6]   A spatially constrained mixture model for image segmentation [J].
Blekas, K ;
Likas, A ;
Galatsanos, NP ;
Lagaris, IE .
IEEE TRANSACTIONS ON NEURAL NETWORKS, 2005, 16 (02) :494-498
[7]   Random forests [J].
Breiman, L .
MACHINE LEARNING, 2001, 45 (01) :5-32
[8]   Quantification of heterogeneity observed in medical images [J].
Brooks, Frank J. ;
Grigsby, Perry W. .
BMC MEDICAL IMAGING, 2013, 13
[9]   The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository [J].
Clark, Kenneth ;
Vendt, Bruce ;
Smith, Kirk ;
Freymann, John ;
Kirby, Justin ;
Koppel, Paul ;
Moore, Stephen ;
Phillips, Stanley ;
Maffitt, David ;
Pringle, Michael ;
Tarbox, Lawrence ;
Prior, Fred .
JOURNAL OF DIGITAL IMAGING, 2013, 26 (06) :1045-1057
[10]   ORTHONORMAL BASES OF COMPACTLY SUPPORTED WAVELETS [J].
DAUBECHIES, I .
COMMUNICATIONS ON PURE AND APPLIED MATHEMATICS, 1988, 41 (07) :909-996