Diffusion along the Splitting/Commitment Probability Reaction Coordinate

被引:56
作者
Berezhkovskii, Alexander M. [1 ]
Szabo, Attila [2 ]
机构
[1] NIH, Math & Stat Comp Lab, Div Computat Biosci, Ctr Informat Technol, Bethesda, MD 20892 USA
[2] NIDDK, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
关键词
TRANSITION-PATH THEORY; PROTEIN; MODEL; KINETICS; DYNAMICS; STATES;
D O I
10.1021/jp403043a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The splitting or commitment probabilities of states in the region of configuration space that separates reactants and products play an important role in the theory of chemical reactions. Assuming that the splitting probability changes more slowly than any other coordinate, we project multidimensional diffusive dynamics onto it. The resulting one-dimensional diffusion equation is not exact because the assumed separation of time scales does not hold in general. Nevertheless, this equation has the remarkable property that it always predicts the exact value of the number of transitions between reactants and products per unit time at equilibrium and hence the exact reaction rate. In the special case of two deep basins separated by a harmonic saddle, this equation is equivalent to the one that describes diffusion along a coordinate perpendicular to the transition state, defined as the surface starting from which reactants and products are reached with equal probability.
引用
收藏
页码:13115 / 13119
页数:5
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