High performance computing in biomedical applications

被引：17

作者：

Bastrakov, S. ^{[1
]}

Meyerov, I. ^{[1
]}

Gergel, V. ^{[1
]}

Gonoskov, A. ^{[2
]}

Gorshkov, A. ^{[1
,2
]}

Efimenko, E. ^{[2
]}

Ivanchenko, M. ^{[1
]}

Kirillin, M. ^{[2
]}

Malova, A. ^{[1
]}

Osipov, G. ^{[1
]}

Petrov, V. ^{[1
]}

Surmin, I. ^{[1
]}

Vildemanov, A. ^{[1
]}

机构：

[1] Lobachevsky State Univ Nizhni Novgorod, 23 Prospekt Gagarina, Nizhnii Novgorod 603950, Russia

[2] Russian Acad Sci, Inst Appl Phys, Nizhnii Novgorod 603950, Russia

来源：

2013 INTERNATIONAL CONFERENCE ON COMPUTATIONAL SCIENCE | 2013年 / 18卷

关键词：

scientific computing; large-scale problems; highly scalable software; software for heterogeneous clusters; GPU computing; plasma simulation; heart activity simulation; brain sensing simulation; molecular dynamics simulation; 2 INTERACTING PARTICLES; VENTRICULAR-FIBRILLATION; COHERENT PROPAGATION; SIMULATION; CURRENTS; MODEL; CELL;

D O I：

10.1016/j.procs.2013.05.164

中图分类号：

TP301 [理论、方法];

学科分类号：

081202 ;

摘要：

This paper presents the results of the development of a biomedical software system at the Nizhni Novgorod State University High Performance Computing Competence Center. We consider four main fields: plasma simulation, heart activity simulation, brain sensing simulation, molecular dynamics simulation. The software system is aimed at large-scale simulation on cluster systems with high efficiency and scalability. We demonstrate current results of the numerical simulation, analyze performance and propose the ways to improve efficiency.

引用

页码：10 / 19

页数：10

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