Updating the Micro-Tom TILLING platform

被引:21
作者
Okabe, Yoshihiro [1 ]
Ariizumi, Tohru [1 ]
Ezura, Hiroshi [1 ]
机构
[1] Univ Tsukuba, Fac Life & Environm Sci, Tsukuba, Ibaraki 3058572, Japan
关键词
Micro-Tom; TILLING; tomato; reverse genetics; DETECT INDUCED MUTATIONS; INDUCED POINT MUTATIONS; FUNCTIONAL GENOMICS; REVERSE GENETICS; FRUIT-SET; LYCOPERSICON-ESCULENTUM; MODEL SYSTEM; DISCOVERY; MUTANTS; GENES;
D O I
10.1270/jsbbs.63.42
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
The dwarf tomato variety Micro-Tom is regarded as a model system for functional genomics studies in tomato. Various tomato genomic tools in the genetic background of Micro-Tom have been established, such as mutant collections, genome information and a metabolomic database. Recent advances in tomato genome sequencing have brought about a significant need for reverse genetics tools that are accessible to the larger community, because a great number of gene sequences have become available from public databases. To meet the requests from the tomato research community, we have developed the Micro-Tom Targeting-Induced Local Lesions IN Genomes (TILLING) platform, which is comprised of more than 5000 EMS-mutagenized lines. The platform serves as a reverse genetics tool for efficiently identifying mutant alleles in parallel with the development of Micro-Tom mutant collections. The combination of Micro-Tom mutant libraries and the TILLING approach enables researchers to accelerate the isolation of desirable mutants for unraveling gene function or breeding. To upgrade the genomic tool of Micro-Tom, the development of a new mutagenized population is underway. In this paper, the current status of the Micro-Tom TILLING platform and its future prospects are described.
引用
收藏
页码:42 / 48
页数:7
相关论文
共 61 条
[1]   Potential of a mutant-based reverse genetic approach for functional genomics and molecular breeding in soybean [J].
Anai, Toyoaki .
BREEDING SCIENCE, 2011, 61 (05) :462-467
[2]   Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics [J].
Aoki, Koh ;
Yano, Kentaro ;
Suzuki, Ayako ;
Kawamura, Shingo ;
Sakurai, Nozomu ;
Suda, Kunihiro ;
Kurabayashi, Atsushi ;
Suzuki, Tatsuya ;
Tsugane, Taneaki ;
Watanabe, Manabu ;
Ooga, Kazuhide ;
Torii, Maiko ;
Narita, Takanori ;
Shin-i, Tadasu ;
Kohara, Yuji ;
Yamamoto, Naoki ;
Takahashi, Hideki ;
Watanabe, Yuichiro ;
Egusa, Mayumi ;
Kodama, Motoichiro ;
Ichinose, Yuki ;
Kikuchi, Mari ;
Fukushima, Sumire ;
Okabe, Akiko ;
Arie, Tsutomu ;
Sato, Yuko ;
Yazawa, Katsumi ;
Satoh, Shinobu ;
Omura, Toshikazu ;
Ezura, Hiroshi ;
Shibata, Daisuke .
BMC GENOMICS, 2010, 11
[3]   RNA silencing in plants [J].
Baulcombe, D .
NATURE, 2004, 431 (7006) :356-363
[4]   A combined biochemical screen and TILLING approach identifies mutations in Sorghum bicolor L. Moench resulting in acyanogenic forage production [J].
Blomstedt, Cecilia K. ;
Gleadow, Roslyn M. ;
O'Donnell, Natalie ;
Naur, Peter ;
Jensen, Kenneth ;
Laursen, Tomas ;
Olsen, Carl Erik ;
Stuart, Peter ;
Hamill, John D. ;
Moller, Birger Lindberg ;
Neale, Alan D. .
PLANT BIOTECHNOLOGY JOURNAL, 2012, 10 (01) :54-66
[5]   The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl [J].
Bombarely, Aureliano ;
Menda, Naama ;
Tecle, Isaak Y. ;
Buels, Robert M. ;
Strickler, Susan ;
Fischer-York, Thomas ;
Pujar, Anuradha ;
Leto, Jonathan ;
Gosselin, Joseph ;
Mueller, Lukas A. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D1149-D1155
[6]   High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes [J].
Botticella, Ermelinda ;
Sestili, Francesco ;
Hernandez-Lopez, Antonio ;
Phillips, Andrew ;
Lafiandra, Domenico .
BMC PLANT BIOLOGY, 2011, 11
[7]   A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.) [J].
Caldwell, DG ;
McCallum, N ;
Shaw, P ;
Muehlbauer, GJ ;
Marshall, DF ;
Waugh, R .
PLANT JOURNAL, 2004, 40 (01) :143-150
[8]   Gibberellin regulation of fruit set and growth in tomato [J].
Carlos Serrani, Juan ;
Sanjuan, Rafael ;
Ruiz-Rivero, Omar ;
Fos, Mariano ;
Luis Garcia-Martinez, Jose .
PLANT PHYSIOLOGY, 2007, 145 (01) :246-257
[9]   Metabolic regulation underlying tomato fruit development [J].
Carrari, Fernando ;
Fernie, Alisdair R. .
JOURNAL OF EXPERIMENTAL BOTANY, 2006, 57 (09) :1883-1897
[10]   Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research [J].
Carvalho, Rogerio F. ;
Campos, Marcelo L. ;
Pino, Lilian E. ;
Crestana, Simone L. ;
Zsoegoen, Agustin ;
Lima, Joni E. ;
Benedito, Vagner A. ;
Peres, Lazaro E. P. .
PLANT METHODS, 2011, 7