The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

被引：472

作者：

Peng, Zhenhua ^{[1
]}

Lu, Ying ^{[2
]}

Li, Lubin ^{[1
]}

Zhao, Qiang ^{[2
]}

Feng, Qi ^{[2
]}

Gao, Zhimin ^{[3
]}

Lu, Hengyun ^{[2
]}

Hu, Tao ^{[3
]}

Yao, Na ^{[1
]}

Liu, Kunyan ^{[2
]}

Li, Yan ^{[2
]}

Fan, Danlin ^{[2
]}

Guo, Yunli ^{[2
]}

Li, Wenjun ^{[2
]}

Lu, Yiqi ^{[2
]}

Weng, Qijun ^{[2
]}

Zhou, CongCong ^{[2
]}

Zhang, Lei ^{[2
]}

Huang, Tao ^{[2
]}

Zhao, Yan ^{[2
]}

Zhu, Chuanrang ^{[2
]}

Liu, Xinge ^{[3
]}

Yang, Xuewen ^{[3
]}

Wang, Tao ^{[1
]}

Miao, Kun ^{[1
]}

Zhuang, Caiyun ^{[1
]}

Cao, Xiaolu ^{[1
]}

Tang, Wenli ^{[3
]}

Liu, Guanshui ^{[3
]}

Liu, Yingli ^{[3
]}

Chen, Jie ^{[1
]}

Liu, Zhenjing ^{[1
]}

Yuan, Licai ^{[3
]}

Liu, Zhenhua ^{[1
]}

Huang, Xuehui ^{[2
]}

Lu, Tingting ^{[2
]}

Fei, Benhua ^{[3
]}

Ning, Zemin ^{[2
]}

Han, Bin ^{[2
]}

Jiang, Zehui ^{[1
,3
]}

机构：

[1] Chinese Acad Forestry, Res Inst Forestry, Key Lab Tree Breeding & Cultivat, State Forestry Adm, Beijing, Peoples R China

[2] Chinese Acad Sci, Natl Ctr Gene Res, Shanghai Inst Plant Physiol & Ecol, Shanghai Inst Biol Sci, Shanghai, Peoples R China

[3] Int Ctr Bamboo & Rattan, Beijing, Peoples R China

来源：

NATURE GENETICS | 2013年 / 45卷 / 04期

关键词：

POPULUS-TRICHOCARPA; ORYZA-SATIVA; RICE; GENE; SEQUENCE; GRASSES; DIVERSIFICATION; EXPRESSION; DIVERSITY; POACEAE;

D O I：

10.1038/ng.2569

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Bamboo represents the only major lineage of grasses that is native to forests and is one of the most important non-timber forest products in the world. However, no species in the Bambusoideae subfamily has been sequenced. Here, we report a high-quality draft genome sequence of moso bamboo (P. heterocycla var. pubescens). The 2.05-Gb assembly covers 95% of the genomic region. Gene prediction modeling identified 31,987 genes, most of which are supported by cDNA and deep RNA sequencing data. Analyses of clustered gene families and gene collinearity show that bamboo underwent whole-genome duplication 7-12 million years ago. Identification of gene families that are key in cell wall biosynthesis suggests that the whole-genome duplication event generated more gene duplicates involved in bamboo shoot development. RNA sequencing analysis of bamboo flowering tissues suggests a potential connection between drought-responsive and flowering genes.

引用

页码：456 / 461

页数：6

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