Single-Feature Polymorphism Mapping in Bread Wheat

被引：7

作者：

Banks, Travis W. ^{[1
]}

Jordan, Mark C. ^{[1
]}

Somers, Daryl J. ^{[2
]}

机构：

[1] Agr & Agri Food Canada, Cereal Res Ctr, Winnipeg, MB R3T 2M9, Canada

[2] Vineland Res & Innovat Ctr, Vineland Stn, ON L0R 2E0, Canada

来源：

PLANT GENOME | 2009年 / 2卷 / 02期

关键词：

D O I：

10.3835/plantgenome2009.02.0009

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Probe hybridization data from the Affymetrix GeneChip platform can be used to identify genetic polymorphisms. Developed from gene expression data, these single-feature polymorphism (SFP) markers are located in or are tightly associated with gene sequences. Using two different methods to identify SFPs, 1035 and 875 SFPs were mapped in a segregating population of 64 doubled haploid lines from the Triticum aestivum L. cross RL4452 x 'AC Domain'. Statistical associations between the SFP maps and the rice (Oryza sativa L. ssp. japonica) genome were in agreement with known cereal syntenic blocks, and the mapping data were corroborated by previously established physical locations for wheat expressed sequence tags. This approach allowed the rapid identification of markers from the genic regions of the complex hexaploid wheat genome.

引用

页码：167 / 178

页数：12

共 34 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].

BENNETT, MD ;

SMITH, JB .

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1976, 274 (933) :227-274

[3] Large-scale identification of single-feature polymorphisms in complex genomes [J].

Borevitz, JO ;

Liang, D ;

Plouffe, D ;

Chang, HS ;

Zhu, T ;

Weigel, D ;

Berry, CC ;

Winzeler, E ;

Chory, J .

GENOME RESEARCH, 2003, 13 (03) :513-523

[4]

Borevitz Justin, 2006, V323, P137

[5] Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana [J].

Borevitz, Justin O. ;

Hazen, Samuel P. ;

Michael, Todd P. ;

Morris, Geoffrey P. ;

Baxter, Ivan R. ;

Hu, Tina T. ;

Chen, Huaming ;

Werner, Jonathan D. ;

Nordborg, Magnus ;

Salf, David E. ;

Kay, Steve A. ;

Chory, Joanne ;

Weigel, Detlef ;

Jones, Jonathan D. G. ;

Ecker, Joseph R. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (29) :12057-12062

[6]

Close Timothy J., 2007, V406, P161

[7] Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus [J].

Coram, Tristan E. ;

Settles, Matthew L. ;

Wang, Meinan ;

Chen, Xianming .

THEORETICAL AND APPLIED GENETICS, 2008, 117 (03) :401-411

[8] Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit [J].

Cui, XP ;

Xu, J ;

Asghar, R ;

Condamine, P ;

Svensson, JT ;

Wanamaker, S ;

Stein, N ;

Roose, M ;

Close, TJ .

BIOINFORMATICS, 2005, 21 (20) :3852-3858

[9] Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array [J].

Das, Sayan ;

Bhat, Prasanna R. ;

Sudhakar, Chinta ;

Ehlers, Jeffrey D. ;

Wanamaker, Steve ;

Roberts, Philip A. ;

Cui, Xinping ;

Close, Timothy J. .

BMC GENOMICS, 2008, 9 (1)

[10] Mapping and analysis of quantitative trait loci in experimental populations [J].

Doerge, RW .

NATURE REVIEWS GENETICS, 2002, 3 (01) :43-52

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